RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 IL1RNP18510 177 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 HNMTP50135 292 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 LRIF1Q5T3J3 769 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 LRRC66Q68CR7 880 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 C8orf59Q8N0T1 100 aaPredicted RBP20.74■□□□□ 0.91
VPS28-205ENST00000526204 TMEM132CQ8N3T6 1108 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 ECHDC3Q96DC8 303 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 ITCHQ96J02 903 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 RBM4BQ9BQ04 359 aaKnown RBP20.74■□□□□ 0.91
VPS28-205ENST00000526204 RBM4Q9BWF3 364 aaKnown RBP20.74■□□□□ 0.91
VPS28-205ENST00000526204 OSBPL10Q9BXB5 764 aa20.74■□□□□ 0.91
VPS28-205ENST00000526204 PAIP1Q9H074 479 aaKnown RBP20.74■□□□□ 0.91
VPS28-205ENST00000526204 CARS2Q9HA77 564 aaKnown RBP20.74■□□□□ 0.91
VPS28-205ENST00000526204 ZNF106Q9H2Y7 1883 aaKnown RBP20.73■□□□□ 0.91
VPS28-205ENST00000526204 IGLV3-16A0A075B6K0 115 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 PDYNP01213 254 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 HIST1H2AGP0C0S8 130 aaPredicted RBP20.73■□□□□ 0.91
VPS28-205ENST00000526204 JUNBP17275 347 aaPredicted RBP20.73■□□□□ 0.91
VPS28-205ENST00000526204 HIST1H2ADP20671 130 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 MAPK1P28482 360 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 CCR7P32248 378 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 CD70P32970 193 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 S100A3P33764 101 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 EMP3P54852 163 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 SLC7A9P82251 487 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 CTBSQ01459 385 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 GCNT7Q6ZNI0 430 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 UBE2R2Q712K3 238 aaPredicted RBP20.73■□□□□ 0.91
VPS28-205ENST00000526204 CALHM3Q86XJ0 350 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 ADHFE1Q8IWW8 467 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 BBS7Q8IWZ6 715 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 ZNF555Q8NEP9 628 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 SELENOMQ8WWX9 145 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 LZICQ8WZA0 190 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 HIST1H2AHQ96KK5 128 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 HIST1H2AJQ99878 128 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 H2AFJQ9BTM1 129 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 TBCDQ9BTW9 1192 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 TOR3AQ9H497 397 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 SUV39H2Q9H5I1 410 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 ELOVL6Q9H5J4 265 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 CLEC4EQ9ULY5 219 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 TMED5Q9Y3A6 229 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 PCDHB14Q9Y5E9 798 aa20.73■□□□□ 0.91
VPS28-205ENST00000526204 PABPN1LA6NDY0 278 aaKnown RBP20.72■□□□□ 0.91
VPS28-205ENST00000526204 C16orf96A6NNT2 1141 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 H3BMQ9 156 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 CREG1O75629 220 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 PRKD3O94806 890 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 EPORP19235 508 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 PRPH2P23942 346 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 EEF1B2P24534 225 aaKnown RBP20.72■□□□□ 0.91
VPS28-205ENST00000526204 GABRR2P28476 465 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 GRSF1Q12849 480 aaKnown RBP eCLIP20.72■□□□□ 0.91
VPS28-205ENST00000526204 NKG7Q16617 165 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 ATP13A5Q4VNC0 1218 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 BROXQ5VW32 411 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 GPR107Q5VW38 600 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 DNAJC14Q6Y2X3 702 aaPredicted RBP20.72■□□□□ 0.91
VPS28-205ENST00000526204 PJA1Q8NG27 643 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 MTFMTQ96DP5 389 aaKnown RBP20.72■□□□□ 0.91
VPS28-205ENST00000526204 FAM120BQ96EK7 910 aaKnown RBP20.72■□□□□ 0.91
VPS28-205ENST00000526204 COG8Q96MW5 612 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 MCCC1Q96RQ3 725 aaPredicted RBP20.72■□□□□ 0.91
VPS28-205ENST00000526204 CREBZFQ9NS37 354 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 FAM118AQ9NWS6 357 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 HECAQ9UBI9 543 aaPredicted RBP20.72■□□□□ 0.91
VPS28-205ENST00000526204 INTS6Q9UL03 887 aaKnown RBP20.72■□□□□ 0.91
VPS28-205ENST00000526204 PLXNA4Q9HCM2 1894 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 NOL3O60936 208 aaKnown RBP20.72■□□□□ 0.91
VPS28-205ENST00000526204 SRCP12931 536 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 AOAHP28039 575 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 YAP1P46937 504 aaKnown RBP20.72■□□□□ 0.91
VPS28-205ENST00000526204 PPP2R2BQ00005 443 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 PTSQ03393 145 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 DDX53Q86TM3 631 aaKnown RBP20.72■□□□□ 0.91
VPS28-205ENST00000526204 PLPP6Q8IY26 295 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 NCLNQ969V3 563 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 TESCQ96BS2 214 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 CMTM7Q96FZ5 175 aa20.72■□□□□ 0.91
VPS28-205ENST00000526204 CPPED1Q9BRF8 314 aaPredicted RBP20.72■□□□□ 0.91
VPS28-205ENST00000526204 MAGED1Q9Y5V3 778 aaPredicted RBP20.72■□□□□ 0.91
VPS28-205ENST00000526204 TRIM64BA6NI03 449 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 AREL1O15033 823 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 NUAK1O60285 661 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 RECQL5O94762 991 aaPredicted RBP20.71■□□□□ 0.91
VPS28-205ENST00000526204 ACPPP15309 386 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 ELK4P28324 431 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 SHMT2P34897 504 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 CYP4F8P98187 520 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 B4GALNT1Q00973 533 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 TUBA3CQ13748 450 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 BOP1Q14137 746 aaKnown RBP20.71■□□□□ 0.91
VPS28-205ENST00000526204 GBX1Q14549 363 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 PON2Q15165 354 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 EID3Q8N140 333 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 L3MBTL4Q8NA19 623 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 CLHC1Q8NHS4 586 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 ASB11Q8WXH4 323 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 HDAC2Q92769 488 aaKnown RBP20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms