RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 RNF148Q8N7C7 305 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 DDX51Q8N8A6 666 aaKnown RBP eCLIP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PNPLA1Q8N8W4 532 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 AMER3Q8N944 861 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 RASGEF1AQ8N9B8 481 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 LMNTD1Q8N9Z9 388 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPERTQ8NA61 448 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CNBD1Q8NA66 436 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 C8orf58Q8NAV2 365 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 KDM1BQ8NB78 822 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC4A11Q8NBS3 891 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 UXS1Q8NBZ7 420 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 BBOF1Q8ND07 529 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 BHLHE23Q8NDY6 225 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM71CQ8NEG0 241 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 DNAAF1Q8NEP3 725 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMIEQ8NEW7 156 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF397Q8NF99 534 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR13C2Q8NGS9 318 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR2T34Q8NGX1 318 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR10T2Q8NGX3 314 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR8K5Q8NH50 307 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR52J3Q8NH60 311 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 OCC1Q8TAD7 63 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 BBS10Q8TAM1 723 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC35B2Q8TB61 432 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 MYCBPAPQ8TBZ2 947 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SUN5Q8TC36 379 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 AGR3Q8TD06 166 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 MIPOL1Q8TD10 442 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 GPT2Q8TD30 523 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TRAF3IP1Q8TDR0 691 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 LRRC8CQ8TDW0 803 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ST7LQ8TDW4 575 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ELP5Q8TE02 316 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TRPC4APQ8TEL6 797 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 C2CD4CQ8TF44 421 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATP8B4Q8TF62 1192 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 WIPF2Q8TF74 440 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 NTN5Q8WTR8 489 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CLEC4CQ8WTT0 213 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC20A1Q8WUM9 679 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 HEXDCQ8WVB3 486 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM171Q8WVE6 324 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM170AQ8WVE7 144 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CKAP2Q8WWK9 683 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 OIT3Q8WWZ8 545 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 RLN3Q8WXF3 142 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ADAMTS14Q8WXS8 1223 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 LPIN2Q92539 896 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 FIG4Q92562 907 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAPGEF5Q92565 580 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ARHGAP45Q92619 1136 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PIGKQ92643 395 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAD54LQ92698 747 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 DPF1Q92782 380 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 KCNJ9Q92806 393 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLCO4A1Q96BD0 722 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPSB1Q96BD6 273 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CTHRC1Q96CG8 243 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 RASD2Q96D21 266 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 MSI2Q96DH6 328 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 MTBPQ96DY7 904 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 FBXO17Q96EF6 278 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PHF21BQ96EK2 531 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 C19orf60Q96EN9 201 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CCDC51Q96ER9 411 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 EDC3Q96F86 508 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ELMOD3Q96FG2 381 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 BSCL2Q96G97 398 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDKN2AIPNLQ96HQ2 116 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC41A2Q96JW4 573 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM84BQ96KN1 310 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 RPGRIP1Q96KN7 1286 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 LINC00615Q96LM1 132 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM81BQ96LP2 452 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SAMD8Q96LT4 415 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ADAD1Q96M93 576 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 HARBI1Q96MB7 349 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF560Q96MR9 790 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 GDAP1L1Q96MZ0 367 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF830Q96NB3 372 aaPredicted RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF558Q96NG5 402 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 AGAP3Q96P47 875 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 RBM14Q96PK6 669 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLITRK1Q96PX8 696 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TEFMQ96QE5 360 aaKnown RBP0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 NUDCD1Q96RS6 583 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 MYADMQ96S97 322 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SMC6Q96SB8 1091 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDRT15Q96T59 188 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PCDHB18PQ96TA0 734 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 PCYT2Q99447 389 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 NEU1Q99519 415 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 SEPHS2Q99611 448 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 ADAM2Q99965 735 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 C17orf62Q9BQA9 187 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 VKORC1Q9BQB6 163 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TUBA1CQ9BQE3 449 aa0.57□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM47Q9BQJ4 181 aa0.57□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms