RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 NUDT6P53370 316 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 TRIM32Q13049 653 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 GRB7Q14451 532 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 GANABQ14697 944 aaKnown RBP12.42□□□□□ -0.42
USP53-209ENST00000514665 ZBED5Q49AG3 693 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 GPR33Q49SQ1 333 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 RFTN2Q52LD8 501 aaPredicted RBP12.42□□□□□ -0.42
USP53-209ENST00000514665 RNASE12Q5GAN4 147 aaKnown RBP12.42□□□□□ -0.42
USP53-209ENST00000514665 RERGQ96A58 199 aaPredicted RBP12.42□□□□□ -0.42
USP53-209ENST00000514665 DIRAS2Q96HU8 199 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 OR2AG1Q9H205 316 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 AASDHPPTQ9NRN7 309 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.42□□□□□ -0.42
USP53-209ENST00000514665 PHPT1Q9NRX4 125 aaPredicted RBP12.42□□□□□ -0.42
USP53-209ENST00000514665 ZIM2Q9NZV7 527 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 MARCH4Q9P2E8 410 aaPredicted RBP12.42□□□□□ -0.42
USP53-209ENST00000514665 ZNF487B1APH4 448 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 CHURC1-FNTBB4DL54 471 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 CACNB4O00305 520 aaPredicted RBP12.42□□□□□ -0.42
USP53-209ENST00000514665 OR5F1O95221 314 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 SAGP10523 405 aaPredicted RBP12.42□□□□□ -0.42
USP53-209ENST00000514665 IL7RP16871 459 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 RGS1Q08116 209 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 IL18R1Q13478 541 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 SERINC3Q13530 473 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 GRB14Q14449 540 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 DSC3Q14574 896 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 CES5AQ6NT32 575 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 CLIP4Q8N3C7 705 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 MAPK15Q8TD08 544 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 TMEM40Q8WWA1 233 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 TOP1MTQ969P6 601 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 AURKBQ96GD4 344 aaPredicted RBP12.42□□□□□ -0.42
USP53-209ENST00000514665 IL4I1Q96RQ9 567 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 LMAN2LQ9H0V9 348 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 TMLHEQ9NVH6 421 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 VPS29Q9UBQ0 182 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 FBXW2Q9UKT8 454 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 PGRMC2O15173 223 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 HTRA2O43464 458 aaPredicted RBP12.42□□□□□ -0.42
USP53-209ENST00000514665 PCDH7O60245 1069 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 OR1I1O60431 355 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 GADD45GO95257 159 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 ENGP17813 658 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 PSMA3P25788 255 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 RPS6KA3P51812 740 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 PCDH1Q08174 1060 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 PTCHD3Q3KNS1 767 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 FRG2Q64ET8 278 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 Q6ZVU0 165 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 AKAP14Q86UN6 197 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 KREMEN2Q8NCW0 462 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 ZMIZ2Q8NF64 920 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 OR5AK3PQ8NH89 298 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 SH3RF2Q8TEC5 729 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 KLK6Q92876 244 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 FRG2BQ96QU4 278 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 MARCH7Q9H992 704 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 SMURF2Q9HAU4 748 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 COQ6Q9Y2Z9 468 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 ARID1BQ8NFD5 2236 aaPredicted RBP12.42□□□□□ -0.42
USP53-209ENST00000514665 IGKV6D-21A0A0A0MT36 114 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 ZNF99A8MXY4 864 aaPredicted RBP12.42□□□□□ -0.42
USP53-209ENST00000514665 PRNPP04156 253 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 ALOX5P09917 674 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 LAMP2P13473 410 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 PRPS1L1P21108 318 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 ARSDP51689 593 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 PTGR1Q14914 329 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 NPTX1Q15818 432 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 ERI1Q8IV48 349 aaKnown RBP12.42□□□□□ -0.42
USP53-209ENST00000514665 C1orf52Q8N6N3 182 aaKnown RBP12.42□□□□□ -0.42
USP53-209ENST00000514665 MRGPRX2Q96LB1 330 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 TSGA13Q96PP4 275 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 BRINP2Q9C0B6 783 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 UBAP1Q9NZ09 502 aa12.42□□□□□ -0.42
USP53-209ENST00000514665 CARNS1A5YM72 827 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 PLK4O00444 970 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 ONECUT3O60422 494 aaPredicted RBP12.41□□□□□ -0.42
USP53-209ENST00000514665 NME6O75414 186 aaPredicted RBP12.41□□□□□ -0.42
USP53-209ENST00000514665 INHAP05111 366 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 PCCBP05166 539 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 LINGO3P0C6S8 592 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 CD36P16671 472 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 ZNF33AQ06730 810 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 NDUFAF6Q330K2 333 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 C6orf136Q5SQH8 315 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 GOLGA7Q7Z5G4 137 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 ZNF655Q8N720 491 aaPredicted RBP12.41□□□□□ -0.42
USP53-209ENST00000514665 BEND7Q8N7W2 519 aaPredicted RBP12.41□□□□□ -0.42
USP53-209ENST00000514665 KLHL23Q8NBE8 558 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 KBTBD7Q8WVZ9 684 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 HSPBAP1Q96EW2 488 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 C8orf48Q96LL4 319 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 GPATCH1Q9BRR8 931 aaKnown RBP12.41□□□□□ -0.42
USP53-209ENST00000514665 SLC32A1Q9H598 525 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 TVP23BQ9NYZ1 205 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 CPSF4LA6NMK7 179 aaKnown RBP12.41□□□□□ -0.42
USP53-209ENST00000514665 ARVCFO00192 962 aa12.41□□□□□ -0.42
USP53-209ENST00000514665 PRAMEF11O60813 436 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms