RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 C3P1Q6ZMU1 363 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 NIPA1Q7RTP0 329 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 SZRD1Q7Z422 152 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 FBXO33Q7Z6M2 555 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 NRROSQ86YC3 692 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 RASGRP3Q8IV61 690 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 C3orf58Q8NDZ4 430 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 FEZF2Q8TBJ5 459 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 CHPT1Q8WUD6 406 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 CPT1BQ92523 772 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 NCSTNQ92542 709 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 GTF2H4Q92759 462 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 SMIM12Q96EX1 92 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 PPP1R16AQ96I34 528 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 TMEM209Q96SK2 561 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 SPIN2AQ99865 258 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 SPIN2BQ9BPZ2 258 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 RAB11FIP5Q9BXF6 653 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 ESRP2Q9H6T0 727 aaKnown RBP3.52□□□□□ -1.85
USP53-205ENST00000509769 LMAN1LQ9HAT1 526 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 KCNJ16Q9NPI9 418 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 PRDM9Q9NQV7 894 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 GPHNQ9NQX3 736 aaPredicted RBP3.52□□□□□ -1.85
USP53-205ENST00000509769 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.52□□□□□ -1.85
USP53-205ENST00000509769 CDH22Q9UJ99 828 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 ZNF214Q9UL59 606 aaPredicted RBP3.52□□□□□ -1.85
USP53-205ENST00000509769 DOLKQ9UPQ8 538 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 KIAA1024Q9UPX6 916 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 ADGRF5Q8IZF2 1346 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 C5P01031 1676 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 N4BP2Q86UW6 1770 aaPredicted RBP3.52□□□□□ -1.85
USP53-205ENST00000509769 SLC12A8A0AV02 714 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 CPED1A4D0V7 1026 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 CARNS1A5YM72 827 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 C2orf78A6NCI8 922 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 SEC14L6B5MCN3 397 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 DDX39AO00148 427 aaKnown RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 CLIC1O00299 241 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 STK25O00506 426 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 SUV39H1O43463 412 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 ANGPTL7O43827 346 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 SC5DO75845 299 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 GSTM1P09488 218 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 ZSCAN5DPP0CG00 497 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 IFI30P13284 250 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 CAPN3P20807 821 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 GADD45AP24522 165 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 RAB13P51153 203 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 IDH3GP51553 393 aaPredicted RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 ZNF157P51786 506 aaPredicted RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 CLCN5P51795 746 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 TAS2R50P59544 299 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 LCN6P62502 163 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 ERVK-8P63133 956 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 MC2RQ01718 297 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 GAD2Q05329 585 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 ORC1Q13415 861 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 PWP1Q13610 501 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 GAS6Q14393 721 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 MTF1Q14872 753 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 TRAM2Q15035 370 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 ZNF674Q2M3X9 581 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 USP41Q3LFD5 358 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 LRIT3Q3SXY7 679 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 ZNF311Q5JNZ3 666 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 FNBP1LQ5T0N5 605 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 TDRD10Q5VZ19 366 aaKnown RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 ZNF470Q6ECI4 717 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 FBXO11Q86XK2 927 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 PDSS2Q86YH6 399 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 GALNT13Q8IUC8 556 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 RASGEF1AQ8N9B8 481 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 COLGALT1Q8NBJ5 622 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 TXNDC5Q8NBS9 432 aaKnown RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 PLBD2Q8NHP8 589 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 ETNPPLQ8TBG4 499 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 BPIFA2Q96DR5 249 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 TMEM41AQ96HV5 264 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 TECTBQ96PL2 329 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 MRPL57Q9BQC6 102 aaKnown RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 FAIM2Q9BWQ8 316 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 SOX17Q9H6I2 414 aaPredicted RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 IPPKQ9H8X2 491 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 NINJ2Q9NZG7 142 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 PI4KBQ9UBF8 816 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 GHRLQ9UBU3 117 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 GTF2IRD1Q9UHL9 959 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 ZNHIT2Q9UHR6 403 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 GGT7Q9UJ14 662 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 SLC39A10Q9ULF5 831 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 EXOGQ9Y2C4 368 aaKnown RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 AK6Q9Y3D8 172 aaKnown RBP3.51□□□□□ -1.85
USP53-205ENST00000509769 PCDHA1Q9Y5I3 950 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 PCDHAC2Q9Y5I4 1007 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 CDH10Q9Y6N8 788 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 TIAM2Q8IVF5 1701 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 ARL5CA6NH57 179 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 NEDD8-MDP1E9PL57 170 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 ICMTO60725 284 aa3.51□□□□□ -1.85
USP53-205ENST00000509769 RAB36O95755 333 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms