RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 LRIG3Q6UXM1 1119 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 SLCO6A1Q86UG4 719 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 OR4E2Q8NGC2 313 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 NXNL1Q96CM4 212 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 CABS1Q96KC9 395 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 IL17FQ96PD4 163 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 OGFRQ9NZT2 677 aa28.75■■■□□ 2.19
LIMCH1-211ENST00000509638 A0A1W2PPM1 405 aa28.74■■■□□ 2.19
LIMCH1-211ENST00000509638 A0A1W2PQM1 296 aa28.74■■■□□ 2.19
LIMCH1-211ENST00000509638 GOLGA8RI6L899 631 aa28.74■■■□□ 2.19
LIMCH1-211ENST00000509638 PROS1P07225 676 aa28.74■■■□□ 2.19
LIMCH1-211ENST00000509638 PKLRP30613 574 aa28.74■■■□□ 2.19
LIMCH1-211ENST00000509638 SHMT2P34897 504 aa28.74■■■□□ 2.19
LIMCH1-211ENST00000509638 RAB28P51157 221 aa28.74■■■□□ 2.19
LIMCH1-211ENST00000509638 FAM83EQ2M2I3 478 aa28.74■■■□□ 2.19
LIMCH1-211ENST00000509638 AMIGO1Q86WK6 493 aa28.74■■■□□ 2.19
LIMCH1-211ENST00000509638 PTERQ96BW5 349 aa28.74■■■□□ 2.19
LIMCH1-211ENST00000509638 ABCG4Q9H172 646 aa28.74■■■□□ 2.19
LIMCH1-211ENST00000509638 LRRN3Q9H3W5 708 aa28.74■■■□□ 2.19
LIMCH1-211ENST00000509638 EPB41L1Q9H4G0 881 aa28.74■■■□□ 2.19
LIMCH1-211ENST00000509638 NMRAL1Q9HBL8 299 aa28.74■■■□□ 2.19
LIMCH1-211ENST00000509638 APOBEC2Q9Y235 224 aaKnown RBP28.74■■■□□ 2.19
LIMCH1-211ENST00000509638 KLHL2O95198 593 aa28.73■■■□□ 2.19
LIMCH1-211ENST00000509638 PYGBP11216 843 aa28.73■■■□□ 2.19
LIMCH1-211ENST00000509638 TFEBP19484 476 aa28.73■■■□□ 2.19
LIMCH1-211ENST00000509638 CSF2RBP32927 897 aa28.73■■■□□ 2.19
LIMCH1-211ENST00000509638 FRA10AC1Q70Z53 315 aa28.73■■■□□ 2.19
LIMCH1-211ENST00000509638 PLD6Q8N2A8 252 aaKnown RBP28.73■■■□□ 2.19
LIMCH1-211ENST00000509638 OR9A1PQ8NGU1 263 aa28.73■■■□□ 2.19
LIMCH1-211ENST00000509638 MCOLN3Q8TDD5 553 aa28.73■■■□□ 2.19
LIMCH1-211ENST00000509638 ACMSDQ8TDX5 336 aa28.73■■■□□ 2.19
LIMCH1-211ENST00000509638 PKP4Q99569 1192 aa28.73■■■□□ 2.19
LIMCH1-211ENST00000509638 UTP6Q9NYH9 597 aaKnown RBP28.73■■■□□ 2.19
LIMCH1-211ENST00000509638 FAM221BA6H8Z2 402 aa28.72■■■□□ 2.19
LIMCH1-211ENST00000509638 PABPN1LA6NDY0 278 aaKnown RBP28.72■■■□□ 2.19
LIMCH1-211ENST00000509638 OPA1O60313 960 aa28.72■■■□□ 2.19
LIMCH1-211ENST00000509638 ENO2P09104 434 aaPredicted RBP28.72■■■□□ 2.19
LIMCH1-211ENST00000509638 AMD1P17707 334 aa28.72■■■□□ 2.19
LIMCH1-211ENST00000509638 CD1CP29017 333 aa28.72■■■□□ 2.19
LIMCH1-211ENST00000509638 GLRBP48167 497 aa28.72■■■□□ 2.19
LIMCH1-211ENST00000509638 OR4D1Q15615 310 aa28.72■■■□□ 2.19
LIMCH1-211ENST00000509638 MBOAT1Q6ZNC8 495 aa28.72■■■□□ 2.19
LIMCH1-211ENST00000509638 CLEC14AQ86T13 490 aa28.72■■■□□ 2.19
LIMCH1-211ENST00000509638 DENND1AQ8TEH3 1009 aa28.72■■■□□ 2.19
LIMCH1-211ENST00000509638 RAB11FIP5Q9BXF6 653 aa28.72■■■□□ 2.19
LIMCH1-211ENST00000509638 ALG9Q9H6U8 611 aa28.72■■■□□ 2.19
LIMCH1-211ENST00000509638 RDH14Q9HBH5 336 aa28.72■■■□□ 2.19
LIMCH1-211ENST00000509638 ATXN7L1Q9ULK2 861 aaPredicted RBP28.72■■■□□ 2.19
LIMCH1-211ENST00000509638 NOVA2Q9UNW9 492 aaKnown RBP28.72■■■□□ 2.19
LIMCH1-211ENST00000509638 OR6C74A6NCV1 312 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 DKK1O94907 266 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 KLHL35Q6PF15 583 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 OOSP2Q86WS3 158 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 RAB42Q8N4Z0 105 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 KIAA1191Q96A73 305 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 GFM1Q96RP9 751 aaKnown RBP28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 NUDT22Q9BRQ3 303 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 SPATA7Q9P0W8 599 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 OARD1Q9Y530 152 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 SPTBN2O15020 2390 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 OR5K3A6NET4 321 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 SLC16A8O95907 504 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 HIST1H2AGP0C0S8 130 aaPredicted RBP28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 HIST1H2ADP20671 130 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 E2F1Q01094 437 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 KLC3Q6P597 504 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 DHRS13Q6UX07 377 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 USP53Q70EK8 1073 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 LMNTD1Q8N9Z9 388 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 HIST1H2AHQ96KK5 128 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 TSNARE1Q96NA8 513 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 RUFY1Q96T51 708 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 HIST1H2AJQ99878 128 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 H2AFJQ9BTM1 129 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 TRIM54Q9BYV2 358 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 ZNF358Q9NW07 568 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 ARL15Q9NXU5 204 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 OR6C2Q9NZP2 312 aa28.71■■■□□ 2.19
LIMCH1-211ENST00000509638 SNRNP200O75643 2136 aaKnown RBP28.7■■■□□ 2.19
LIMCH1-211ENST00000509638 D6RAR5 112 aa28.7■■■□□ 2.18
LIMCH1-211ENST00000509638 NTN3O00634 580 aaPredicted RBP28.7■■■□□ 2.18
LIMCH1-211ENST00000509638 CPNE6O95741 557 aa28.7■■■□□ 2.18
LIMCH1-211ENST00000509638 COL6A2P12110 1019 aa28.7■■■□□ 2.18
LIMCH1-211ENST00000509638 AP1S2P56377 157 aa28.7■■■□□ 2.18
LIMCH1-211ENST00000509638 SPIDRQ14159 915 aa28.7■■■□□ 2.18
LIMCH1-211ENST00000509638 ISCA2Q86U28 154 aa28.7■■■□□ 2.18
LIMCH1-211ENST00000509638 LINC01555Q8NAE3 123 aa28.7■■■□□ 2.18
LIMCH1-211ENST00000509638 WDR48Q8TAF3 677 aa28.7■■■□□ 2.18
LIMCH1-211ENST00000509638 NCSTNQ92542 709 aa28.7■■■□□ 2.18
LIMCH1-211ENST00000509638 GPR78Q96P69 363 aa28.7■■■□□ 2.18
LIMCH1-211ENST00000509638 HRASLS2Q9NWW9 162 aa28.7■■■□□ 2.18
LIMCH1-211ENST00000509638 RNF112Q9ULX5 631 aa28.7■■■□□ 2.18
LIMCH1-211ENST00000509638 BTN3A3O00478 584 aa28.69■■■□□ 2.18
LIMCH1-211ENST00000509638 RGS16O15492 202 aaPredicted RBP28.69■■■□□ 2.18
LIMCH1-211ENST00000509638 GUCA1CO95843 209 aa28.69■■■□□ 2.18
LIMCH1-211ENST00000509638 ERGP11308 486 aa28.69■■■□□ 2.18
LIMCH1-211ENST00000509638 PPP1CAP62136 330 aa28.69■■■□□ 2.18
LIMCH1-211ENST00000509638 INSM1Q01101 510 aaPredicted RBP28.69■■■□□ 2.18
LIMCH1-211ENST00000509638 CFHR1Q03591 330 aa28.69■■■□□ 2.18
LIMCH1-211ENST00000509638 PUM1Q14671 1186 aaKnown RBP eCLIP28.69■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms