RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 NIPA2Q8N8Q9 360 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 OR2T34Q8NGX1 318 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 OR2T3Q8NH03 318 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 LRRC20Q8TCA0 184 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 C12orf65Q9H3J6 166 aaKnown RBP12.9□□□□□ -0.34
PTPRF-215ENST00000496447 CLCA3PQ9Y6N3 262 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 ABCC6O95255 1503 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 FMN2Q9NZ56 1722 aa12.9□□□□□ -0.34
PTPRF-215ENST00000496447 TTC24A2A3L6 582 aaPredicted RBP12.9□□□□□ -0.35
PTPRF-215ENST00000496447 K7EPI3 171 aa12.9□□□□□ -0.35
PTPRF-215ENST00000496447 MTX2O75431 263 aa12.9□□□□□ -0.35
PTPRF-215ENST00000496447 EFNA1P20827 205 aaPredicted RBP12.9□□□□□ -0.35
PTPRF-215ENST00000496447 ABATP80404 500 aa12.9□□□□□ -0.35
PTPRF-215ENST00000496447 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.9□□□□□ -0.35
PTPRF-215ENST00000496447 LYSMD3Q7Z3D4 306 aa12.9□□□□□ -0.35
PTPRF-215ENST00000496447 AVL9Q8NBF6 648 aa12.9□□□□□ -0.35
PTPRF-215ENST00000496447 SETD7Q8WTS6 366 aaKnown RBP12.9□□□□□ -0.35
PTPRF-215ENST00000496447 NMUR2Q9GZQ4 415 aa12.9□□□□□ -0.35
PTPRF-215ENST00000496447 SAP18O00422 153 aaKnown RBP12.89□□□□□ -0.35
PTPRF-215ENST00000496447 HAT1O14929 419 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 PLIN3O60664 434 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 IL7RP16871 459 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 ATF4P18848 351 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-215ENST00000496447 ATP5A1P25705 553 aaKnown RBP12.89□□□□□ -0.35
PTPRF-215ENST00000496447 CLCNKAP51800 687 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 NCBP2P52298 156 aaKnown RBP eCLIP12.89□□□□□ -0.35
PTPRF-215ENST00000496447 NAPRTQ6XQN6 538 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 KAT2AQ92830 837 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 EBF3Q9H4W6 596 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 SIX2Q9NPC8 291 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 ITM2CQ9NQX7 267 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 OR51F1A6NGY5 319 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 UPK3BL1B0FP48 263 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 UPK3BL2E5RIL1 263 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 NOS1APO75052 506 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-215ENST00000496447 RBMXL2O75526 392 aaKnown RBP12.89□□□□□ -0.35
PTPRF-215ENST00000496447 ACVRL1P37023 503 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 GRK6P43250 576 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 CCR10P46092 362 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 GATMP50440 423 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 RPS14P62263 151 aaKnown RBP12.89□□□□□ -0.35
PTPRF-215ENST00000496447 SCRN3Q0VDG4 424 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 WDR45BQ5MNZ6 344 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 DRICH1Q6PGQ1 229 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-215ENST00000496447 MBOAT1Q6ZNC8 495 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 SNX33Q8WV41 574 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 HTRA1Q92743 480 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 SMOC2Q9H3U7 446 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 MCUBQ9NWR8 336 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 A0A0G2JN53 185 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 NPHS1O60500 1241 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 LDOC1O95751 146 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-215ENST00000496447 PRKD1Q15139 912 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-215ENST00000496447 TFB2MQ9H5Q4 396 aaKnown RBP12.89□□□□□ -0.35
PTPRF-215ENST00000496447 MTMR11A4FU01 709 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 CASKO14936 926 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 PMM2O15305 246 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 CHST10O43529 356 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 SSNA1O43805 119 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 MMP20O60882 483 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 MNDAP41218 407 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 CHRNA6Q15825 494 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 CDCA2Q69YH5 1023 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-215ENST00000496447 PAOXQ6QHF9 649 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 ADGRG6Q86SQ4 1221 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 NUDT13Q86X67 352 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 RAB43Q86YS6 212 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 TMEM145Q8NBT3 493 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 MCFD2Q8NI22 146 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 RAD9AQ99638 391 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 SPATA9Q9BWV2 254 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 PLEKHA1Q9HB21 404 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 ADAP2Q9NPF8 381 aa12.89□□□□□ -0.35
PTPRF-215ENST00000496447 A0A1W2PRG6 482 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 LEFTY2O00292 366 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 SERPINA1P01009 418 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 HADHBP55084 474 aaKnown RBP12.88□□□□□ -0.35
PTPRF-215ENST00000496447 TPTEP56180 551 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 SLBPQ14493 270 aaKnown RBP eCLIP12.88□□□□□ -0.35
PTPRF-215ENST00000496447 MYBPC3Q14896 1274 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 EIPR1Q53HC9 387 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 PRAMEF14Q5SWL7 426 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 PRAMEF13Q5VWM6 474 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 GKN2Q86XP6 184 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 LMX1AQ8TE12 382 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 RBM4BQ9BQ04 359 aaKnown RBP12.88□□□□□ -0.35
PTPRF-215ENST00000496447 RBM4Q9BWF3 364 aaKnown RBP12.88□□□□□ -0.35
PTPRF-215ENST00000496447 DZANK1Q9NVP4 752 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 GDAP2Q9NXN4 497 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 SPATA7Q9P0W8 599 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 FNIP2Q9P278 1114 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 CICQ96RK0 1608 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-215ENST00000496447 A0A0J9YVX5 310 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 PCDH7O60245 1069 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 SCELO95171 688 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 SNAI1O95863 264 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-215ENST00000496447 AHCYP23526 432 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 HCAR3P49019 387 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 SIRPB2Q5JXA9 342 aa12.88□□□□□ -0.35
PTPRF-215ENST00000496447 METTL21CQ5VZV1 264 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms