RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 OSBPL6Q9BZF3 934 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 GRIP2Q9C0E4 1043 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 TNPO3Q9Y5L0 923 aaKnown RBP11.87□□□□□ -0.51
HDAC6-230ENST00000488543 AP4B1Q9Y6B7 739 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 TRPM6Q9BX84 2022 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 ZFC3H1O60293 1989 aaKnown RBP11.87□□□□□ -0.51
HDAC6-230ENST00000488543 GPC4O75487 556 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 HSPA7P48741 367 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 ERVPABLB-1P60509 514 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 HSPA14Q0VDF9 509 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 GAS6Q14393 721 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 HERC3Q15034 1050 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 IL23RQ5VWK5 629 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 CYP2R1Q6VVX0 501 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 ZNF852Q6ZMS4 543 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 GPRIN3Q6ZVF9 776 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 TRIM74Q86UV6 250 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 APLFQ8IW19 511 aaPredicted RBP11.87□□□□□ -0.51
HDAC6-230ENST00000488543 OR52B6Q8NGF0 335 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 OR14C36Q8NHC7 312 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 NUS1Q96E22 293 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 FOXQ1Q9C009 403 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 FAM192AQ9GZU8 254 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 AKTIPQ9H8T0 292 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 PDE10AQ9Y233 779 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 BTRCQ9Y297 605 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 TIMM22Q9Y584 194 aa11.87□□□□□ -0.51
HDAC6-230ENST00000488543 TMEM202A6NGA9 273 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 CCDC160A6NGH7 325 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 OR2AG2A6NM03 316 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 ADH1BP00325 375 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 DNTTP04053 509 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 NDUFV2P19404 249 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 MYBPC1Q00872 1141 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 GTF2H2Q13888 395 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 BOP1Q14137 746 aaKnown RBP11.86□□□□□ -0.51
HDAC6-230ENST00000488543 SULT1C3Q6IMI6 304 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 GTF2H2CQ6P1K8 395 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 LETMD1Q6P1Q0 360 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 C16orf89Q6UX73 402 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 NLRP8Q86W28 1048 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 ZNF687Q8N1G0 1237 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 PLA2G15Q8NCC3 412 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 CXorf40AQ8TE69 158 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 ASB11Q8WXH4 323 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 ELMO1Q92556 727 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 SIPA1Q96FS4 1042 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 NUSAP1Q9BXS6 441 aaKnown RBP11.86□□□□□ -0.51
HDAC6-230ENST00000488543 VCX3BQ9H321 246 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 NOL11Q9H8H0 719 aaKnown RBP11.86□□□□□ -0.51
HDAC6-230ENST00000488543 LMAN1LQ9HAT1 526 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 CCDC167Q9P0B6 97 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 TCRBV21S2A2A0A5A6 115 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 E7ENX8 843 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 TSPAN6O43657 245 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 OR4F21O95013 312 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 PAK4O96013 591 aaPredicted RBP11.86□□□□□ -0.51
HDAC6-230ENST00000488543 FTH1P02794 183 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 ALDOCP09972 364 aaKnown RBP11.86□□□□□ -0.51
HDAC6-230ENST00000488543 UROSP10746 265 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 PRLHRP49683 370 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 DPTQ07507 201 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 TMEM115Q12893 351 aaPredicted RBP11.86□□□□□ -0.51
HDAC6-230ENST00000488543 FZD5Q13467 585 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 PTK2BQ14289 1009 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 UBXN2BQ14CS0 331 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 RBBP5Q15291 538 aaKnown RBP11.86□□□□□ -0.51
HDAC6-230ENST00000488543 ZXDCQ2QGD7 858 aaPredicted RBP11.86□□□□□ -0.51
HDAC6-230ENST00000488543 PUS10Q3MIT2 529 aaKnown RBP11.86□□□□□ -0.51
HDAC6-230ENST00000488543 FBXO43Q4G163 708 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 ZNF658BQ4V348 819 aaPredicted RBP11.86□□□□□ -0.51
HDAC6-230ENST00000488543 RBM44Q6ZP01 1051 aaKnown RBP11.86□□□□□ -0.51
HDAC6-230ENST00000488543 SIX5Q8N196 739 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 RP9Q8TA86 221 aaKnown RBP11.86□□□□□ -0.51
HDAC6-230ENST00000488543 SLC12A9Q9BXP2 914 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 TRIM8Q9BZR9 551 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 CD244Q9BZW8 370 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 POLG2Q9UHN1 485 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 GON4LQ3T8J9 2241 aa11.86□□□□□ -0.51
HDAC6-230ENST00000488543 GFYI3L273 518 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 KPNA5O15131 536 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 UBDO15205 165 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 SLCO2B1O94956 709 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 C8GP07360 202 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 LINC00032P0C843 101 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 RPL10P27635 214 aaKnown RBP11.85□□□□□ -0.51
HDAC6-230ENST00000488543 MAT2AP31153 395 aaKnown RBP11.85□□□□□ -0.51
HDAC6-230ENST00000488543 SOX11P35716 441 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 TRAF3Q13114 568 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 FGL2Q14314 439 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 GRB7Q14451 532 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 SQLEQ14534 574 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 XKR7Q5GH72 579 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 CDKL4Q5MAI5 379 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 KIAA1324Q6UXG2 1013 aaKnown RBP11.85□□□□□ -0.51
HDAC6-230ENST00000488543 NEK10Q6ZWH5 1172 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 UBE2R2Q712K3 238 aaPredicted RBP11.85□□□□□ -0.51
HDAC6-230ENST00000488543 DCBLD1Q8N8Z6 715 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 HMGB4Q8WW32 186 aa11.85□□□□□ -0.51
HDAC6-230ENST00000488543 PMM1Q92871 262 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms