RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 PPP4R1Q8TF05 950 aa12.55□□□□□ -0.4
HDAC6-227ENST00000485102 N4BP2L2Q92802 583 aaPredicted RBP12.55□□□□□ -0.4
HDAC6-227ENST00000485102 HAUS1Q96CS2 278 aa12.55□□□□□ -0.4
HDAC6-227ENST00000485102 PDLIM2Q96JY6 352 aa12.55□□□□□ -0.4
HDAC6-227ENST00000485102 APOL2Q9BQE5 337 aa12.55□□□□□ -0.4
HDAC6-227ENST00000485102 HGH1Q9BTY7 390 aa12.55□□□□□ -0.4
HDAC6-227ENST00000485102 KLHL25Q9H0H3 589 aa12.55□□□□□ -0.4
HDAC6-227ENST00000485102 XKR8Q9H6D3 395 aa12.55□□□□□ -0.4
HDAC6-227ENST00000485102 NDOR1Q9UHB4 597 aa12.55□□□□□ -0.4
HDAC6-227ENST00000485102 NTNG1Q9Y2I2 539 aa12.55□□□□□ -0.4
HDAC6-227ENST00000485102 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.55□□□□□ -0.4
HDAC6-227ENST00000485102 NUP210LQ5VU65 1888 aa12.55□□□□□ -0.4
HDAC6-227ENST00000485102 A0A0J9YY10 115 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 H7C0C1 242 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 AP2A1O95782 977 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 CHRM5P08912 532 aaPredicted RBP12.54□□□□□ -0.4
HDAC6-227ENST00000485102 TPBGLP0DKB5 382 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 MMP11P24347 488 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 PSMB4P28070 264 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 MC4RP32245 332 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 PTPN7P35236 360 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 NSG1P42857 185 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 TSFMP43897 325 aaKnown RBP12.54□□□□□ -0.4
HDAC6-227ENST00000485102 ATP5OP48047 213 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 CDKN1CP49918 316 aaPredicted RBP12.54□□□□□ -0.4
HDAC6-227ENST00000485102 OLIG2Q13516 323 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 KIR2DS3Q14952 304 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 C1QL3Q5VWW1 255 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 C11orf63Q6NUN7 778 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 MYO7BQ6PIF6 2116 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 KCNMB4Q86W47 210 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 CLDN19Q8N6F1 224 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 OR5K2Q8NHB8 316 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 ACTL9Q8TC94 416 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 FKBP10Q96AY3 582 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 CDKN2AIPNLQ96HQ2 116 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 SPATA13Q96N96 652 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 WDR77Q9BQA1 342 aaPredicted RBP12.54□□□□□ -0.4
HDAC6-227ENST00000485102 SLC26A1Q9H2B4 701 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 FAM96AQ9H5X1 160 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 WDR54Q9H977 334 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 ZBTB20Q9HC78 741 aaPredicted RBP12.54□□□□□ -0.4
HDAC6-227ENST00000485102 SLC22A11Q9NSA0 550 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 TXLNGQ9NUQ3 528 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 NLE1Q9NVX2 485 aaPredicted RBP12.54□□□□□ -0.4
HDAC6-227ENST00000485102 PLCL2Q9UPR0 1127 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 CDYLQ9Y232 598 aa12.54□□□□□ -0.4
HDAC6-227ENST00000485102 SLC5A10A0PJK1 596 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 BTNL10A8MVZ5 291 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 KDM1AO60341 852 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 STK10O94804 968 aaKnown RBP12.53□□□□□ -0.4
HDAC6-227ENST00000485102 RBP3P10745 1247 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 GLRBP48167 497 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 MARCKSL1P49006 195 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 ARSFP54793 590 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 OTUD4Q01804 1114 aaKnown RBP12.53□□□□□ -0.4
HDAC6-227ENST00000485102 CACNG1Q06432 222 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 KIF5AQ12840 1032 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 ITIH4Q14624 930 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 CYP2A13Q16696 494 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 C1orf189Q5VU69 101 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 YOD1Q5VVQ6 348 aaPredicted RBP12.53□□□□□ -0.4
HDAC6-227ENST00000485102 B3GNTL1Q67FW5 361 aaPredicted RBP12.53□□□□□ -0.4
HDAC6-227ENST00000485102 KCTD11Q693B1 232 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 PACS1Q6VY07 963 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 OVCH1Q7RTY7 1134 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 KIAA1328Q86T90 577 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 CCDC50Q8IVM0 306 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 CDKL3Q8IVW4 592 aaPredicted RBP12.53□□□□□ -0.4
HDAC6-227ENST00000485102 PIANPQ8IYJ0 282 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 OR5AR1Q8NGP9 310 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 STYXQ8WUJ0 223 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 DLG3Q92796 817 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 LRRC45Q96CN5 670 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 DNAJC1Q96KC8 554 aaKnown RBP12.53□□□□□ -0.4
HDAC6-227ENST00000485102 TBL1YQ9BQ87 522 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 NDC1Q9BTX1 674 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 HEMGNQ9BXL5 484 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 C10orf88Q9H8K7 445 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 SPHK1Q9NYA1 384 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 DHCR7Q9UBM7 475 aaKnown RBP12.53□□□□□ -0.4
HDAC6-227ENST00000485102 ASF1AQ9Y294 204 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 PCDHA13Q9Y5I0 950 aa12.53□□□□□ -0.4
HDAC6-227ENST00000485102 ZSCAN12O43309 604 aa12.52□□□□□ -0.41
HDAC6-227ENST00000485102 CTSBP07858 339 aa12.52□□□□□ -0.41
HDAC6-227ENST00000485102 CCDC175P0C221 793 aa12.52□□□□□ -0.41
HDAC6-227ENST00000485102 PIM1P11309 404 aaPredicted RBP12.52□□□□□ -0.41
HDAC6-227ENST00000485102 EDN3P14138 238 aa12.52□□□□□ -0.41
HDAC6-227ENST00000485102 MSNP26038 577 aaKnown RBP12.52□□□□□ -0.41
HDAC6-227ENST00000485102 TNFRSF8P28908 595 aa12.52□□□□□ -0.41
HDAC6-227ENST00000485102 PER3P56645 1201 aa12.52□□□□□ -0.41
HDAC6-227ENST00000485102 TMPRSS15P98073 1019 aa12.52□□□□□ -0.41
HDAC6-227ENST00000485102 DBN1Q16643 649 aa12.52□□□□□ -0.41
HDAC6-227ENST00000485102 PRAMEF13Q5VWM6 474 aa12.52□□□□□ -0.41
HDAC6-227ENST00000485102 TRIM73Q86UV7 250 aa12.52□□□□□ -0.41
HDAC6-227ENST00000485102 ZNF655Q8N720 491 aaPredicted RBP12.52□□□□□ -0.41
HDAC6-227ENST00000485102 FAR1Q8WVX9 515 aa12.52□□□□□ -0.41
HDAC6-227ENST00000485102 KRT35Q92764 455 aa12.52□□□□□ -0.41
HDAC6-227ENST00000485102 GOLPH3Q9H4A6 298 aa12.52□□□□□ -0.41
HDAC6-227ENST00000485102 MRM3Q9HC36 420 aaKnown RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms