RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 LMF2Q9BU23 707 aaKnown RBP2.73□□□□□ -1.97
VPS50-216ENST00000484954 SMARCAD1Q9H4L7 1026 aa2.73□□□□□ -1.97
VPS50-216ENST00000484954 PCDH11YQ9BZA8 1340 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 A0A1W2PQ09 198 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 ANKUB1A6NFN9 424 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 EPM2AB3EWF7 344 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 B4DLN1 442 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 CTDSP2O14595 271 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 ADAMDEC1O15204 470 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 MED24O75448 989 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 DFFBO76075 338 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 TOMM70O94826 608 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 BCL10O95999 233 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 ACADSP16219 412 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 TRIM21P19474 475 aaKnown RBP2.72□□□□□ -1.97
VPS50-216ENST00000484954 CAPN3P20807 821 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 CYP2A7P20853 494 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 MMP12P39900 470 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 HNF4AP41235 474 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 MRPL12P52815 198 aaKnown RBP2.72□□□□□ -1.97
VPS50-216ENST00000484954 ARF3P61204 181 aaPredicted RBP2.72□□□□□ -1.97
VPS50-216ENST00000484954 ARF1P84077 181 aaKnown RBP2.72□□□□□ -1.97
VPS50-216ENST00000484954 ZNF415Q09FC8 603 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 AIMP2Q13155 320 aaKnown RBP2.72□□□□□ -1.97
VPS50-216ENST00000484954 HERC3Q15034 1050 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 GLIPR1L2Q4G1C9 344 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 C1orf122Q6ZSJ8 110 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 RSRC2Q7L4I2 434 aaKnown RBP2.72□□□□□ -1.97
VPS50-216ENST00000484954 KBTBD6Q86V97 674 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 P2RY8Q86VZ1 359 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 LMNTD2Q8IXW0 634 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 LSMEM2Q8N112 164 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 MARVELD2Q8N4S9 558 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 PAPD5Q8NDF8 572 aaKnown RBP2.72□□□□□ -1.97
VPS50-216ENST00000484954 SMAP2Q8WU79 429 aaPredicted RBP2.72□□□□□ -1.97
VPS50-216ENST00000484954 PHLDA1Q8WV24 401 aaPredicted RBP2.72□□□□□ -1.97
VPS50-216ENST00000484954 DGCR6LQ9BY27 220 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 OR2B2Q9GZK3 357 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 Q9N2K0 584 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 P4HTMQ9NXG6 502 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 ARHGEF38Q9NXL2 777 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 SUCLA2Q9P2R7 463 aaPredicted RBP2.72□□□□□ -1.97
VPS50-216ENST00000484954 PPP1R3CQ9UQK1 317 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 PTRH2Q9Y3E5 179 aaKnown RBP2.72□□□□□ -1.97
VPS50-216ENST00000484954 AGRNO00468 2067 aa2.72□□□□□ -1.97
VPS50-216ENST00000484954 ARID4BQ4LE39 1312 aaPredicted RBP2.71□□□□□ -1.98
VPS50-216ENST00000484954 ANKRD61A6NGH8 418 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 SOCS3O14543 225 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 MAGEC1O60732 1142 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 RNASEH1O60930 286 aaKnown RBP2.71□□□□□ -1.98
VPS50-216ENST00000484954 SRSF10O75494 262 aaKnown RBP2.71□□□□□ -1.98
VPS50-216ENST00000484954 BAIAP3O94812 1187 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 HSPA8P11142 646 aaKnown RBP2.71□□□□□ -1.98
VPS50-216ENST00000484954 VPREB1P12018 145 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 CAPN2P17655 700 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 JAK1P23458 1154 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 SLC6A6P31641 620 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 PSMB10P40306 273 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 PAX9P55771 341 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 GSDMDP57764 484 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 SIRPAP78324 504 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 COX10Q12887 443 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 TAF10Q12962 218 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 HLA-BQ31612 363 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 DUSP28Q4G0W2 176 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 C2CD6Q53TS8 623 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 IGSF11Q5DX21 431 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 TRIM65Q6PJ69 517 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 TMEM207Q6UWW9 146 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 GPRIN3Q6ZVF9 776 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 SZRD1Q7Z422 152 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 LRRTM1Q86UE6 522 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 CDK20Q8IZL9 346 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 VANGL1Q8TAA9 524 aaPredicted RBP2.71□□□□□ -1.98
VPS50-216ENST00000484954 ZNF486Q96H40 463 aaPredicted RBP2.71□□□□□ -1.98
VPS50-216ENST00000484954 NSMCE3Q96MG7 304 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 NEK1Q96PY6 1258 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 UPF3AQ9H1J1 476 aaKnown RBP2.71□□□□□ -1.98
VPS50-216ENST00000484954 CCDC177Q9NQR7 707 aaPredicted RBP2.71□□□□□ -1.98
VPS50-216ENST00000484954 SERINC1Q9NRX5 453 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 FGF21Q9NSA1 209 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 ZNF215Q9UL58 517 aaPredicted RBP2.71□□□□□ -1.98
VPS50-216ENST00000484954 CSAG2Q9Y5P2 127 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 ZHX2Q9Y6X8 837 aa2.71□□□□□ -1.98
VPS50-216ENST00000484954 ZNF541Q9H0D2 1346 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 A0A1W2PR80 420 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 TMEM221A6NGB7 291 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 PRAMEF11O60813 436 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 NXPH2O95156 264 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 SMIM18P0DKX4 95 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 UGT1A4P22310 534 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 DNASE1P24855 282 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 TLX1P31314 330 aaPredicted RBP2.7□□□□□ -1.98
VPS50-216ENST00000484954 ARSEP51690 589 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 MC1RQ01726 317 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 CREB5Q02930 508 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 NR1D2Q14995 579 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 TAF1BQ53T94 588 aaPredicted RBP2.7□□□□□ -1.98
VPS50-216ENST00000484954 TMEM211Q6ICI0 200 aa2.7□□□□□ -1.98
VPS50-216ENST00000484954 ZNF774Q6NX45 483 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms