RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 SEMA3AQ14563 771 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 KIR2DS3Q14952 304 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 RPS6KA1Q15418 735 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 SLC5A12Q1EHB4 618 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 DEFB110Q30KQ9 67 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 AARS2Q5JTZ9 985 aaKnown RBP15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 MEI1Q5TIA1 1274 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 FAM69BQ5VUD6 431 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 CLEC18BQ6UXF7 455 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 ATCAYQ86WG3 371 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 ZBTB2Q8N680 514 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 GLIS1Q8NBF1 620 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 CLEC18CQ8NCF0 446 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 ASZ1Q8WWH4 475 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 C17orf62Q9BQA9 187 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 PLAGL1Q9UM63 463 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 CDYLQ9Y232 598 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 PADI2Q9Y2J8 665 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 PCDHGB7Q9Y5F8 929 aa15.99■□□□□ 0.15
CCDC28B-204ENST00000469003 SNRNP200O75643 2136 aaKnown RBP15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 FER1L5A0AVI2 2057 aa15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 HCRTR1O43613 425 aa15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 GPC4O75487 556 aa15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 RPN2P04844 631 aa15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 PEBP1P30086 187 aaKnown RBP15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 PKLRP30613 574 aa15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 RPL22P35268 128 aaKnown RBP15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 RAB28P51157 221 aa15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 HSPA14Q0VDF9 509 aa15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 SIX1Q15475 284 aaPredicted RBP15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 CCNG2Q16589 344 aa15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 KYNUQ16719 465 aa15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 PCID2Q5JVF3 399 aa15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 RHBDD2Q6NTF9 364 aa15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 DRICH1Q6PGQ1 229 aaPredicted RBP15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 MED25Q71SY5 747 aa15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 RAB43Q86YS6 212 aa15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 VRK3Q8IV63 474 aa15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 TMEM102Q8N9M5 508 aaPredicted RBP15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 PROKR1Q8TCW9 393 aa15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 LKAAEAR1Q8TD35 194 aa15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 SPRTNQ9H040 489 aaPredicted RBP15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 EIF2B3Q9NR50 452 aaKnown RBP15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 CATSPERZQ9NTU4 200 aa15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 ANAPC5Q9UJX4 755 aa15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 ZNF451Q9Y4E5 1061 aa15.98■□□□□ 0.15
CCDC28B-204ENST00000469003 PRMT5O14744 637 aaPredicted RBP15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 ZSCAN9O15535 394 aaPredicted RBP15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 KLF7O75840 302 aaPredicted RBP15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 APOA4P06727 396 aa15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 ZSCAN5DPP0CG00 497 aa15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 CBSLP0DN79 551 aa15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 CBSP35520 551 aa15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 TTPAP49638 278 aa15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 RRADP55042 308 aa15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 TLDC1Q6P9B6 456 aa15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 UNC5DQ6UXZ4 953 aa15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 C4orf22Q6V702 233 aa15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 DCUN1D3Q8IWE4 304 aa15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 DNAJC22Q8N4W6 341 aa15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 GBP5Q96PP8 586 aa15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 MENTQ9BUN1 341 aa15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 CHRAC1Q9NRG0 131 aa15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 MARCH4Q9P2E8 410 aaPredicted RBP15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 G3BP2Q9UN86 482 aaKnown RBP15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 SRPK3Q9UPE1 567 aa15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 PLCL2Q9UPR0 1127 aa15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 DRG1Q9Y295 367 aaKnown RBP15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 PCSK5Q92824 1860 aa15.97■□□□□ 0.15
CCDC28B-204ENST00000469003 TTLL8A6PVC2 850 aa15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 IQCF5A8MTL0 148 aa15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 ZNF185O15231 689 aa15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 SLCO2B1O94956 709 aa15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 CD63P08962 238 aa15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 AOAHP28039 575 aa15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 SESN2P58004 480 aaPredicted RBP15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 DCDP81605 110 aaKnown RBP15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 ATP1A4Q13733 1029 aa15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 SSPNQ14714 243 aa15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 TMED2Q15363 201 aa15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 NADK2Q4G0N4 442 aa15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 C1orf189Q5VU69 101 aa15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 MLIPQ5VWP3 458 aa15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 LDB1Q86U70 411 aaPredicted RBP15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 HPS6Q86YV9 775 aa15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 ZNF655Q8N720 491 aaPredicted RBP15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 LINC01555Q8NAE3 123 aa15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 FDCSPQ8NFU4 85 aa15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 CFAP61Q8NHU2 1237 aa15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 SLC22A18Q96BI1 424 aa15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 IP6K3Q96PC2 410 aa15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 GPN3Q9UHW5 284 aaPredicted RBP15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 ZKSCAN5Q9Y2L8 839 aa15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 UTP20O75691 2785 aaKnown RBP15.96■□□□□ 0.15
CCDC28B-204ENST00000469003 RELNP78509 3460 aa15.96■□□□□ 0.14
CCDC28B-204ENST00000469003 CREBBPQ92793 2442 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 AP3B1O00203 1094 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 CD3EAPO15446 510 aaKnown RBP15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 DPM1O60762 260 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 CTSBP07858 339 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms