RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ADGRE2Q9UHX3 823 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 PCDHGA11Q9Y5H2 935 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 HEMK1Q9Y5R4 338 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-217ENST00000466159 IGLV3-16A0A075B6K0 115 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 ABHD14A-ACY1A0A1B0GW23 586 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 TRIM64CA6NLI5 447 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 NEDD8-MDP1E9PL57 170 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 DEAF1O75398 565 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-217ENST00000466159 GMNNO75496 209 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 FGF18O76093 207 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 POP4O95707 220 aaKnown RBP8.73□□□□□ -1.01
SYNE1-217ENST00000466159 KRT6AP02538 564 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 KRT6BP04259 564 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 GSNP06396 782 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 OR56A5P0C7T3 313 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 TACR1P25103 407 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 MTHFRP42898 656 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 YAP1P46937 504 aaKnown RBP8.73□□□□□ -1.01
SYNE1-217ENST00000466159 KRT6CP48668 564 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 VEGFBP49765 207 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 CDK9P50750 372 aaKnown RBP8.73□□□□□ -1.01
SYNE1-217ENST00000466159 ARSFP54793 590 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 WDR5P61964 334 aaKnown RBP8.73□□□□□ -1.01
SYNE1-217ENST00000466159 ADARB1P78563 741 aaKnown RBP8.73□□□□□ -1.01
SYNE1-217ENST00000466159 SMU1Q2TAY7 513 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 PTCHD3Q3KNS1 767 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 RUNDC3AQ59EK9 446 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 CARD16Q5EG05 197 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 METTL2BQ6P1Q9 378 aaKnown RBP8.73□□□□□ -1.01
SYNE1-217ENST00000466159 NEK5Q6P3R8 708 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 ABRAXAS1Q6UWZ7 409 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 GCNT7Q6ZNI0 430 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 STK32CQ86UX6 486 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 ANKRD46Q86W74 232 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 GLB1L3Q8NCI6 653 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-217ENST00000466159 SCAMP4Q969E2 229 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 TSSK3Q96PN8 268 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 YME1L1Q96TA2 773 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 P2RY13Q9BPV8 354 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 SLC12A9Q9BXP2 914 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 ZBP1Q9H171 429 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 GORASP2Q9H8Y8 452 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 PARVBQ9HBI1 364 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 INVSQ9Y283 1065 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 PCDHB14Q9Y5E9 798 aa8.73□□□□□ -1.01
SYNE1-217ENST00000466159 ELOVL7A1L3X0 281 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 TRIM64A6NGJ6 449 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 PRAMEF4O60810 478 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 PRSS23O95084 383 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 ACRP10323 421 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 CSF2RAP15509 400 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 ITPKAP23677 461 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 RPS14P62263 151 aaKnown RBP8.72□□□□□ -1.01
SYNE1-217ENST00000466159 LAPTM5Q13571 262 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 PRAMEF9Q5VWM5 478 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 LILRA6Q6PI73 481 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 USP51Q70EK9 711 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 CHST15Q7LFX5 561 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-217ENST00000466159 RNF175Q8N4F7 328 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 BEND7Q8N7W2 519 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-217ENST00000466159 ASB11Q8WXH4 323 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 TCEAL4Q96EI5 215 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 EGLN2Q96KS0 407 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 CCDC115Q96NT0 180 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 MUS81Q96NY9 551 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 INPP5KQ9BT40 448 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 CPEB1Q9BZB8 566 aaKnown RBP8.72□□□□□ -1.01
SYNE1-217ENST00000466159 SLC29A3Q9BZD2 475 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 ELOVL6Q9H5J4 265 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 HPS4Q9NQG7 708 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 ASIC5Q9NY37 505 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 TUBA8Q9NY65 449 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-217ENST00000466159 FAM8A1Q9UBU6 413 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 SLC25A13Q9UJS0 675 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 MAFFQ9ULX9 164 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 SLC22A14Q9Y267 594 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 KCNE1BA0A087WTH5 132 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 CXCR6O00574 342 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 GRM6O15303 877 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 LRATO95237 230 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 CXCL14O95715 111 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 ALBP02768 609 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 ALPLP05186 524 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 HIST1H2AGP0C0S8 130 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-217ENST00000466159 CTSAP10619 480 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 ATP1B2P14415 290 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-217ENST00000466159 HIST1H2ADP20671 130 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 CTBSQ01459 385 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 PPP1R8Q12972 351 aaKnown RBP8.72□□□□□ -1.01
SYNE1-217ENST00000466159 GBX1Q14549 363 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 ZNF648Q5T619 568 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-217ENST00000466159 GPR141Q7Z602 305 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 NECAB2Q7Z6G3 386 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 HS3ST5Q8IZT8 346 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 CLEC4FQ8N1N0 589 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 AADATQ8N5Z0 425 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 KREMEN2Q8NCW0 462 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 GFM2Q969S9 779 aaKnown RBP8.72□□□□□ -1.01
SYNE1-217ENST00000466159 FAM162AQ96A26 154 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 APIPQ96GX9 242 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms