RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 CTRCQ99895 268 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 EFHD1Q9BUP0 239 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 SLC25A18Q9H1K4 315 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 OR52A5Q9H2C5 316 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 TRIT1Q9H3H1 467 aaKnown RBP17.24■□□□□ 0.35
COL7A1-205ENST00000465238 MOCS1Q9NZB8 636 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 ZFATQ9P243 1243 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 KLHL3Q9UH77 587 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 TMEM184BQ9Y519 407 aaPredicted RBP17.24■□□□□ 0.35
COL7A1-205ENST00000465238 HEBP2Q9Y5Z4 205 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 CFAP20Q9Y6A4 193 aaKnown RBP17.24■□□□□ 0.35
COL7A1-205ENST00000465238 COMMD10Q9Y6G5 202 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 COLEC10Q9Y6Z7 277 aa17.24■□□□□ 0.35
COL7A1-205ENST00000465238 E5RI56 91 aa17.23■□□□□ 0.35
COL7A1-205ENST00000465238 PYCARD-AS1I3L0S3 204 aa17.23■□□□□ 0.35
COL7A1-205ENST00000465238 POLR1CO15160 346 aaPredicted RBP17.23■□□□□ 0.35
COL7A1-205ENST00000465238 NIPSNAP2O75323 286 aa17.23■□□□□ 0.35
COL7A1-205ENST00000465238 C9P02748 559 aa17.23■□□□□ 0.35
COL7A1-205ENST00000465238 AOAHP28039 575 aa17.23■□□□□ 0.35
COL7A1-205ENST00000465238 CSRP3P50461 194 aa17.23■□□□□ 0.35
COL7A1-205ENST00000465238 CNSTQ6PJW8 725 aa17.23■□□□□ 0.35
COL7A1-205ENST00000465238 TMEM26Q6ZUK4 368 aa17.23■□□□□ 0.35
COL7A1-205ENST00000465238 CDKL2Q92772 493 aa17.23■□□□□ 0.35
COL7A1-205ENST00000465238 FMO2Q99518 471 aa17.23■□□□□ 0.35
COL7A1-205ENST00000465238 GPN2Q9H9Y4 310 aaPredicted RBP17.23■□□□□ 0.35
COL7A1-205ENST00000465238 SLC40A1Q9NP59 571 aa17.23■□□□□ 0.35
COL7A1-205ENST00000465238 TERTO14746 1132 aaKnown RBP17.22■□□□□ 0.35
COL7A1-205ENST00000465238 TOX3O15405 576 aaPredicted RBP17.22■□□□□ 0.35
COL7A1-205ENST00000465238 SUV39H1O43463 412 aa17.22■□□□□ 0.35
COL7A1-205ENST00000465238 GPC4O75487 556 aa17.22■□□□□ 0.35
COL7A1-205ENST00000465238 SPAG6O75602 509 aa17.22■□□□□ 0.35
COL7A1-205ENST00000465238 STK17BO94768 372 aa17.22■□□□□ 0.35
COL7A1-205ENST00000465238 UBXN7O94888 489 aa17.22■□□□□ 0.35
COL7A1-205ENST00000465238 AHSGP02765 367 aa17.22■□□□□ 0.35
COL7A1-205ENST00000465238 NDUFS1P28331 727 aa17.22■□□□□ 0.35
COL7A1-205ENST00000465238 ABHD18Q0P651 414 aa17.22■□□□□ 0.35
COL7A1-205ENST00000465238 ZNF549Q6P9A3 640 aa17.22■□□□□ 0.35
COL7A1-205ENST00000465238 GALNT7Q86SF2 657 aa17.22■□□□□ 0.35
COL7A1-205ENST00000465238 ZFPM2Q8WW38 1151 aa17.22■□□□□ 0.35
COL7A1-205ENST00000465238 TFGQ92734 400 aaPredicted RBP17.22■□□□□ 0.35
COL7A1-205ENST00000465238 FERD3LQ96RJ6 166 aa17.22■□□□□ 0.35
COL7A1-205ENST00000465238 APMAPQ9HDC9 416 aa17.22■□□□□ 0.35
COL7A1-205ENST00000465238 SIDT1Q9NXL6 827 aaKnown RBP17.22■□□□□ 0.35
COL7A1-205ENST00000465238 NSMCE4AQ9NXX6 385 aa17.22■□□□□ 0.35
COL7A1-205ENST00000465238 TUBD1Q9UJT1 453 aa17.22■□□□□ 0.35
COL7A1-205ENST00000465238 GABRB3P28472 473 aa17.21■□□□□ 0.35
COL7A1-205ENST00000465238 CCR10P46092 362 aa17.21■□□□□ 0.35
COL7A1-205ENST00000465238 GFERP55789 205 aa17.21■□□□□ 0.35
COL7A1-205ENST00000465238 POLE2P56282 527 aa17.21■□□□□ 0.35
COL7A1-205ENST00000465238 GPX6P59796 221 aa17.21■□□□□ 0.35
COL7A1-205ENST00000465238 TUBB4BP68371 445 aa17.21■□□□□ 0.35
COL7A1-205ENST00000465238 NFKB2Q00653 900 aa17.21■□□□□ 0.35
COL7A1-205ENST00000465238 GPR18Q14330 331 aa17.21■□□□□ 0.35
COL7A1-205ENST00000465238 PLEKHS1Q5SXH7 462 aa17.21■□□□□ 0.35
COL7A1-205ENST00000465238 DUS1LQ6P1R4 473 aaKnown RBP17.21■□□□□ 0.35
COL7A1-205ENST00000465238 CYS1Q717R9 158 aa17.21■□□□□ 0.35
COL7A1-205ENST00000465238 TIPARPQ7Z3E1 657 aaKnown RBP17.21■□□□□ 0.35
COL7A1-205ENST00000465238 SLC22A15Q8IZD6 547 aa17.21■□□□□ 0.35
COL7A1-205ENST00000465238 FAM136AQ96C01 138 aa17.21■□□□□ 0.35
COL7A1-205ENST00000465238 AARSD1Q9BTE6 412 aaKnown RBP17.21■□□□□ 0.35
COL7A1-205ENST00000465238 LRRC4CQ9HCJ2 640 aa17.21■□□□□ 0.35
COL7A1-205ENST00000465238 OGFRQ9NZT2 677 aa17.21■□□□□ 0.35
COL7A1-205ENST00000465238 SLC17A6Q9P2U8 582 aa17.21■□□□□ 0.35
COL7A1-205ENST00000465238 IL17BQ9UHF5 180 aa17.21■□□□□ 0.35
COL7A1-205ENST00000465238 NFU1Q9UMS0 254 aa17.21■□□□□ 0.35
COL7A1-205ENST00000465238 HECTD1Q9ULT8 2610 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 LOC101059948A0A1B0GTJ6 334 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 TCRBV9S1A1TA0A576 114 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 VPS26AO75436 327 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 SLCO2B1O94956 709 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 SLU7O95391 586 aaKnown RBP17.2■□□□□ 0.34
COL7A1-205ENST00000465238 DLGAP3O95886 979 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 TYRP1P17643 537 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 AMD1P17707 334 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 KCNAB2Q13303 367 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 MAP7Q14244 749 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 PLCL1Q15111 1095 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 KYNUQ16719 465 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 TTLL9Q3SXZ7 439 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 STRA8Q7Z7C7 330 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 SLC26A11Q86WA9 606 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 ZBTB2Q8N680 514 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 ESX1Q8N693 406 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 PHC3Q8NDX5 983 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 SKA2Q8WVK7 121 aaPredicted RBP17.2■□□□□ 0.34
COL7A1-205ENST00000465238 KCNJ9Q92806 393 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 MVB12BQ9H7P6 319 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 LATS2Q9NRM7 1088 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 CDYLQ9Y232 598 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 ASF1AQ9Y294 204 aa17.2■□□□□ 0.34
COL7A1-205ENST00000465238 NKX2-8O15522 239 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 ACADLP28330 430 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 ECHS1P30084 290 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 STX2P32856 288 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 PHBP35232 272 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 MC1RQ01726 317 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 FOXM1Q08050 763 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 ABRQ12979 859 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 UGT3A1Q6NUS8 523 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 RELL1Q8IUW5 271 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms