RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 CAPN10Q9HC96 672 aa10.69□□□□□ -0.7
SCN9A-205ENST00000454569 TNFRSF12AQ9NP84 129 aa10.69□□□□□ -0.7
SCN9A-205ENST00000454569 IMP3Q9NV31 184 aaKnown RBP10.69□□□□□ -0.7
SCN9A-205ENST00000454569 PTBP2Q9UKA9 531 aaKnown RBP10.69□□□□□ -0.7
SCN9A-205ENST00000454569 ACSL5Q9ULC5 683 aa10.69□□□□□ -0.7
SCN9A-205ENST00000454569 ASF1AQ9Y294 204 aa10.69□□□□□ -0.7
SCN9A-205ENST00000454569 MUC6Q6W4X9 2439 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 SLC16A5O15375 505 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 BIRC5O15392 142 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 TRIM13O60858 407 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 KCNJ13O60928 360 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 PIAS2O75928 621 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 IPO13O94829 963 aaKnown RBP10.68□□□□□ -0.7
SCN9A-205ENST00000454569 CFIP05156 583 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 FBXO45P0C2W1 286 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 SLC35G4P0C7Q5 338 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 MYF5P13349 255 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 GFAPP14136 432 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 LSP1P33241 339 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 HSPA7P48741 367 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 CDH13P55290 713 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 BST1Q10588 318 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 ILF3Q12906 894 aaKnown RBP eCLIP10.68□□□□□ -0.7
SCN9A-205ENST00000454569 GRIK2Q13002 908 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 LRP8Q14114 963 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 DEFB133Q30KQ1 61 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 ZNF678Q5SXM1 525 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 IYDQ6PHW0 289 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 FBXO39Q8N4B4 442 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 PDPRQ8NCN5 879 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 ZNF548Q8NEK5 533 aaPredicted RBP10.68□□□□□ -0.7
SCN9A-205ENST00000454569 RDH11Q8TC12 318 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 PYCR2Q96C36 320 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 PRR11Q96HE9 360 aaPredicted RBP10.68□□□□□ -0.7
SCN9A-205ENST00000454569 FERD3LQ96RJ6 166 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 HGH1Q9BTY7 390 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 KRTAP3-3Q9BYR6 98 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 KRTAP3-2Q9BYR7 98 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 PITPNM3Q9BZ71 974 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 SHCBP1LQ9BZQ2 653 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 GSTO2Q9H4Y5 243 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 RABEP2Q9H5N1 569 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 XKR8Q9H6D3 395 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 MANSC1Q9H8J5 431 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 RDH14Q9HBH5 336 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 ZBTB26Q9HCK0 441 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 ARL15Q9NXU5 204 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 PCOLCE2Q9UKZ9 415 aa10.68□□□□□ -0.7
SCN9A-205ENST00000454569 TDRKHQ9Y2W6 561 aaKnown RBP10.68□□□□□ -0.7
SCN9A-205ENST00000454569 OTOGLQ3ZCN5 2332 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 TCP11X1B4DZS4 312 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 UBFD1O14562 309 aaKnown RBP10.67□□□□□ -0.7
SCN9A-205ENST00000454569 SLC16A8O95907 504 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 CHRNGP07510 517 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 MTHFD1P11586 935 aaKnown RBP10.67□□□□□ -0.7
SCN9A-205ENST00000454569 F3P13726 295 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 GNSP15586 552 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 VCLP18206 1134 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 IMPDH1P20839 514 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 IMPA1P29218 277 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 EEF1DP29692 281 aaKnown RBP10.67□□□□□ -0.7
SCN9A-205ENST00000454569 KPNA2P52292 529 aaKnown RBP10.67□□□□□ -0.7
SCN9A-205ENST00000454569 YBX1P67809 324 aaKnown RBP10.67□□□□□ -0.7
SCN9A-205ENST00000454569 NFKB2Q00653 900 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 SF3A3Q12874 501 aaKnown RBP eCLIP10.67□□□□□ -0.7
SCN9A-205ENST00000454569 SETDB1Q15047 1291 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 HLA-BQ31612 363 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 LIPMQ5VYY2 423 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 WASH2PQ6VEQ5 465 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 FAM47EQ6ZV65 393 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 FRA10AC1Q70Z53 315 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 KANSL1Q7Z3B3 1105 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 GATAD2AQ86YP4 633 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 LRRC56Q8IYG6 542 aaPredicted RBP10.67□□□□□ -0.7
SCN9A-205ENST00000454569 CCNYL1Q8N7R7 359 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 FAM46DQ8NEK8 389 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 OR5K2Q8NHB8 316 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 MCOLN3Q8TDD5 553 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 ZNF480Q8WV37 535 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 MAGEB18Q96M61 343 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 CAMK1GQ96NX5 476 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 ZNF317Q96PQ6 595 aaPredicted RBP10.67□□□□□ -0.7
SCN9A-205ENST00000454569 SORT1Q99523 831 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 ELF4Q99607 663 aaPredicted RBP10.67□□□□□ -0.7
SCN9A-205ENST00000454569 EGFL8Q99944 293 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 GSDMCQ9BYG8 508 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 WASH6PQ9NQA3 447 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 NUDT4Q9NZJ9 180 aa10.67□□□□□ -0.7
SCN9A-205ENST00000454569 STOX2Q9P2F5 926 aaPredicted RBP10.67□□□□□ -0.7
SCN9A-205ENST00000454569 KLHL33A6NCF5 533 aa10.66□□□□□ -0.7
SCN9A-205ENST00000454569 PRR5-ARHGAP8B1AHC4 643 aa10.66□□□□□ -0.7
SCN9A-205ENST00000454569 B4DGG1 531 aa10.66□□□□□ -0.7
SCN9A-205ENST00000454569 MYO1CO00159 1063 aa10.66□□□□□ -0.7
SCN9A-205ENST00000454569 IFRD1O00458 451 aaPredicted RBP10.66□□□□□ -0.7
SCN9A-205ENST00000454569 E2F3O00716 465 aa10.66□□□□□ -0.7
SCN9A-205ENST00000454569 CASC3O15234 703 aaKnown RBP10.66□□□□□ -0.7
SCN9A-205ENST00000454569 AQP9O43315 295 aa10.66□□□□□ -0.7
SCN9A-205ENST00000454569 NOBOXO60393 691 aa10.66□□□□□ -0.7
SCN9A-205ENST00000454569 PRAMEF4O60810 478 aa10.66□□□□□ -0.7
SCN9A-205ENST00000454569 SMIM24O75264 130 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms