RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 SPDYE1Q8NFV5 336 aaPredicted RBP17.53■□□□□ 0.4
SQSTM1-204ENST00000453046 OR2W6PQ8NHA6 318 aa17.53■□□□□ 0.4
SQSTM1-204ENST00000453046 STYXQ8WUJ0 223 aa17.53■□□□□ 0.4
SQSTM1-204ENST00000453046 ZFPM2Q8WW38 1151 aa17.53■□□□□ 0.4
SQSTM1-204ENST00000453046 CDKL2Q92772 493 aa17.53■□□□□ 0.4
SQSTM1-204ENST00000453046 CCM2Q9BSQ5 444 aa17.53■□□□□ 0.4
SQSTM1-204ENST00000453046 HRASLS2Q9NWW9 162 aa17.53■□□□□ 0.4
SQSTM1-204ENST00000453046 SLC24A2Q9UI40 661 aa17.53■□□□□ 0.4
SQSTM1-204ENST00000453046 LNPEPQ9UIQ6 1025 aa17.53■□□□□ 0.4
SQSTM1-204ENST00000453046 IGHV5-51A0A0C4DH38 117 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 OR5K3A6NET4 321 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 AGPSO00116 658 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 RASGRF2O14827 1237 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 CCNYL3P0C7X3 344 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 FGF5P12034 268 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 ZNF28P17035 718 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 STAT5AP42229 794 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 CCR10P46092 362 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 PRLHRP49683 370 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 MGAT5Q09328 741 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 TUBB3Q13509 450 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 LONRF1Q17RB8 773 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 KRT71Q3SY84 523 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 KBTBD12Q3ZCT8 623 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 C16orf46Q6P387 395 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 TRMT10BQ6PF06 316 aaKnown RBP17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 GALNT6Q8NCL4 622 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 HM13Q8TCT9 377 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 STARD8Q92502 1023 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 MAP3K3Q99759 626 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 SH3GL2Q99962 352 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 KIR3DX1Q9H7L2 352 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 ZDHHC3Q9NYG2 299 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 IL17BQ9UHF5 180 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 RARRES3Q9UL19 164 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 HEBP2Q9Y5Z4 205 aa17.52■□□□□ 0.4
SQSTM1-204ENST00000453046 OR6C74A6NCV1 312 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 SGTAO43765 313 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 CDH16O75309 829 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 MYZAPP0CAP1 466 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 TCN2P20062 427 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 NDUFS1P28331 727 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 DLSTP36957 453 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 ACY1Q03154 408 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 CDC20Q12834 499 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 SKIDA1Q1XH10 827 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.51■□□□□ 0.398e-7■■□□□ 14.1
SQSTM1-204ENST00000453046 CES3Q6UWW8 571 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 KCNMB4Q86W47 210 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 SERPINA9Q86WD7 417 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 LRRC6Q86X45 466 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 LILRA3Q8N6C8 439 aaPredicted RBP17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 GOLGA6L1Q8N7Z2 621 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 OR13J1Q8NGT2 312 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 GABPB2Q8TAK5 448 aaPredicted RBP17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 EPS8L3Q8TE67 593 aaKnown RBP17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 SLC41A2Q96JW4 573 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 RMDN2Q96LZ7 410 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 ZNF778Q96MU6 729 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 CD180Q99467 661 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 DHRS4Q9BTZ2 278 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 SLC25A18Q9H1K4 315 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 MED4Q9NPJ6 270 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 STARD5Q9NSY2 213 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 NLE1Q9NVX2 485 aaPredicted RBP17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 GEMIN8Q9NWZ8 242 aaKnown RBP17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 PCDHB3Q9Y5E6 796 aa17.51■□□□□ 0.39
SQSTM1-204ENST00000453046 C17orf113A0A1B0GUU1 675 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 TLCD2A6NGC4 264 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 H7C0S8 307 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 IFRD1O00458 451 aaPredicted RBP17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 ZIC2O95409 532 aaPredicted RBP17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 MT-ND3P03897 115 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 ITGB6P18564 788 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 ACRV1P26436 265 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 ARNTP27540 789 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 CDKN1CP49918 316 aaPredicted RBP17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 POLE2P56282 527 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 PRKAA1Q13131 559 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 KCNAB1Q14722 419 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 EFTUD2Q15029 972 aaKnown RBP eCLIP17.5■□□□□ 0.392e-7■■■□□ 17
SQSTM1-204ENST00000453046 CAPRIN2Q6IMN6 1127 aaKnown RBP17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 KMT5CQ86Y97 462 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 CNTN4Q8IWV2 1026 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 LMNTD2Q8IXW0 634 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 OR4E2Q8NGC2 313 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 SLC44A1Q8WWI5 657 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 CDKN2AIPNLQ96HQ2 116 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 FERD3LQ96RJ6 166 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 PAFAH2Q99487 392 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 FAM167BQ9BTA0 163 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 ADNPQ9H2P0 1102 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 C20orf96Q9NUD7 363 aaPredicted RBP17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 NSMCE4AQ9NXX6 385 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 EURLQ9NYK6 297 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 ZFATQ9P243 1243 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 SEMA5BQ9P283 1151 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 PSMC3IPQ9P2W1 217 aaPredicted RBP17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 SLC2A6Q9UGQ3 507 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 LGALS13Q9UHV8 139 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms