RNA–Protein interactions for RNA: ENST00000451492.5

USP54-207, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 509 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-207ENST00000451492 ACTR5Q9H9F9 607 aaPredicted RBP9.36□□□□□ -0.91
USP54-207ENST00000451492 FAM60AQ9NP50 221 aa9.36□□□□□ -0.91
USP54-207ENST00000451492 ZNF71Q9NQZ8 489 aaPredicted RBP9.36□□□□□ -0.91
USP54-207ENST00000451492 FBXO6Q9NRD1 293 aaPredicted RBP9.36□□□□□ -0.91
USP54-207ENST00000451492 KCND3Q9UK17 655 aa9.36□□□□□ -0.91
USP54-207ENST00000451492 CDYLQ9Y232 598 aa9.36□□□□□ -0.91
USP54-207ENST00000451492 MAD1L1Q9Y6D9 718 aa9.36□□□□□ -0.91
USP54-207ENST00000451492 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.35□□□□□ -0.91
USP54-207ENST00000451492 CTAGE9A4FU28 777 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 E5RI56 91 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 E7EQ34 232 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 TERTO14746 1132 aaKnown RBP9.35□□□□□ -0.91
USP54-207ENST00000451492 HCRTR1O43613 425 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 KDM1AO60341 852 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 GPC4O75487 556 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 BANF1O75531 89 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 CREG1O75629 220 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 DNAJB5O75953 348 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 RPN2P04844 631 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 MAGP20916 626 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 PSMB5P28074 263 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 ITGA1P56199 1179 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 RPS15P62841 145 aaKnown RBP9.35□□□□□ -0.91
USP54-207ENST00000451492 CDK16Q00536 496 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 PLOD1Q02809 727 aaPredicted RBP9.35□□□□□ -0.91
USP54-207ENST00000451492 TSTA3Q13630 321 aaPredicted RBP9.35□□□□□ -0.91
USP54-207ENST00000451492 IL10RAQ13651 578 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 PCM1Q15154 2024 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 ZIC1Q15915 447 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 CCSMST1Q4G0I0 132 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 DNAJC21Q5F1R6 531 aaKnown RBP9.35□□□□□ -0.91
USP54-207ENST00000451492 ZNF789Q5FWF6 425 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 ZNF470Q6ECI4 717 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 KIAA0930Q6ICG6 404 aaPredicted RBP9.35□□□□□ -0.91
USP54-207ENST00000451492 TENM4Q6N022 2769 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 SDCCAG8Q86SQ7 713 aaPredicted RBP9.35□□□□□ -0.91
USP54-207ENST00000451492 DCUN1D3Q8IWE4 304 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 SYTL1Q8IYJ3 562 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 GPR135Q8IZ08 494 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 CARFQ8N187 725 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 ENDOVQ8N8Q3 282 aaKnown RBP9.35□□□□□ -0.91
USP54-207ENST00000451492 GRK7Q8WTQ7 553 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 LPGAT1Q92604 370 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 PITPNM3Q9BZ71 974 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 DDX47Q9H0S4 455 aaKnown RBP9.35□□□□□ -0.91
USP54-207ENST00000451492 SLC25A18Q9H1K4 315 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 CHST8Q9H2A9 424 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 MRM3Q9HC36 420 aaKnown RBP9.35□□□□□ -0.91
USP54-207ENST00000451492 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.35□□□□□ -0.91
USP54-207ENST00000451492 ASIC3Q9UHC3 531 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 SLC39A10Q9ULF5 831 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 SNX12Q9UMY4 172 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 POLHQ9Y253 713 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 MAN2B2Q9Y2E5 1009 aa9.35□□□□□ -0.91
USP54-207ENST00000451492 J3QKU1 62 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 MEN1O00255 615 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 PFDN6O15212 129 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 ZNF749O43361 778 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 OR2B3O76000 313 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 KLK3P07288 261 aaPredicted RBP9.34□□□□□ -0.91
USP54-207ENST00000451492 CHRM3P20309 590 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 RPS3P23396 243 aaKnown RBP eCLIP9.34□□□□□ -0.91
USP54-207ENST00000451492 SLC1A2P43004 574 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 RAB28P51157 221 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 CTBP1Q13363 440 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 CUL1Q13616 776 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 THOC5Q13769 683 aaKnown RBP9.34□□□□□ -0.91
USP54-207ENST00000451492 CYP1B1Q16678 543 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 TYSND1Q2T9J0 566 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 ANKRD20A4Q4UJ75 823 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 RNF187Q5TA31 235 aaPredicted RBP9.34□□□□□ -0.91
USP54-207ENST00000451492 CPZQ66K79 652 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 TTC23LQ6PF05 361 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 UNC5DQ6UXZ4 953 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 BPHLQ86WA6 291 aaPredicted RBP9.34□□□□□ -0.91
USP54-207ENST00000451492 DENND6AQ8IWF6 608 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 KLHL7Q8IXQ5 586 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 DSELQ8IZU8 1212 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 AGGF1Q8N302 714 aaeCLIP9.34□□□□□ -0.91
USP54-207ENST00000451492 ZNF655Q8N720 491 aaPredicted RBP9.34□□□□□ -0.91
USP54-207ENST00000451492 LINC01555Q8NAE3 123 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 OR8K5Q8NH50 307 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 FLVCR1-AS1Q8TAF5 88 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 C9orf43Q8TAL5 461 aaPredicted RBP9.34□□□□□ -0.91
USP54-207ENST00000451492 ACTRT1Q8TDG2 376 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 APOBEC4Q8WW27 367 aaKnown RBP9.34□□□□□ -0.91
USP54-207ENST00000451492 SGSM3Q96HU1 749 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 FOPNLQ96NB1 174 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 BIRC8Q96P09 236 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 MIPEPQ99797 713 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 SPRTNQ9H040 489 aaPredicted RBP9.34□□□□□ -0.91
USP54-207ENST00000451492 C20orf96Q9NUD7 363 aaPredicted RBP9.34□□□□□ -0.91
USP54-207ENST00000451492 ABCF3Q9NUQ8 709 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 PCMTD2Q9NV79 361 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 GEMIN8Q9NWZ8 242 aaKnown RBP9.34□□□□□ -0.91
USP54-207ENST00000451492 OR6C2Q9NZP2 312 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 GALPQ9UBC7 116 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 DHCR7Q9UBM7 475 aaKnown RBP9.34□□□□□ -0.91
USP54-207ENST00000451492 SERTAD3Q9UJW9 196 aa9.34□□□□□ -0.91
USP54-207ENST00000451492 PYCARDQ9ULZ3 195 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms