RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 PCMTD2Q9NV79 361 aa18.73■□□□□ 0.59
USP40-207ENST00000450940 FER1L5A0AVI2 2057 aa18.73■□□□□ 0.59
USP40-207ENST00000450940 A0A0J9YY10 115 aa18.72■□□□□ 0.59
USP40-207ENST00000450940 AVILO75366 819 aa18.72■□□□□ 0.59
USP40-207ENST00000450940 CAPN1P07384 714 aa18.72■□□□□ 0.59
USP40-207ENST00000450940 CYP2A7P20853 494 aa18.72■□□□□ 0.59
USP40-207ENST00000450940 ITGA1P56199 1179 aa18.72■□□□□ 0.59
USP40-207ENST00000450940 NFKB2Q00653 900 aa18.72■□□□□ 0.59
USP40-207ENST00000450940 TMED2Q15363 201 aa18.72■□□□□ 0.59
USP40-207ENST00000450940 ANKRD22Q5VYY1 191 aa18.72■□□□□ 0.59
USP40-207ENST00000450940 LCN10Q6JVE6 187 aa18.72■□□□□ 0.59
USP40-207ENST00000450940 CES3Q6UWW8 571 aa18.72■□□□□ 0.59
USP40-207ENST00000450940 SDCCAG8Q86SQ7 713 aaPredicted RBP18.72■□□□□ 0.59
USP40-207ENST00000450940 TRIM73Q86UV7 250 aa18.72■□□□□ 0.59
USP40-207ENST00000450940 HOOK3Q86VS8 718 aa18.72■□□□□ 0.59
USP40-207ENST00000450940 APLFQ8IW19 511 aaPredicted RBP18.72■□□□□ 0.59
USP40-207ENST00000450940 DCUN1D3Q8IWE4 304 aa18.72■□□□□ 0.59
USP40-207ENST00000450940 LINC01555Q8NAE3 123 aa18.72■□□□□ 0.59
USP40-207ENST00000450940 C9orf43Q8TAL5 461 aaPredicted RBP18.72■□□□□ 0.59
USP40-207ENST00000450940 ACTRT1Q8TDG2 376 aa18.72■□□□□ 0.59
USP40-207ENST00000450940 LPGAT1Q92604 370 aa18.72■□□□□ 0.59
USP40-207ENST00000450940 ABHD17AQ96GS6 310 aa18.72■□□□□ 0.59
USP40-207ENST00000450940 DPH2Q9BQC3 489 aaPredicted RBP18.72■□□□□ 0.59
USP40-207ENST00000450940 ACTR5Q9H9F9 607 aaPredicted RBP18.72■□□□□ 0.59
USP40-207ENST00000450940 PLAGL1Q9UM63 463 aa18.72■□□□□ 0.59
USP40-207ENST00000450940 MAGEB16A2A368 324 aa18.71■□□□□ 0.59
USP40-207ENST00000450940 CDC14CA4D256 554 aa18.71■□□□□ 0.59
USP40-207ENST00000450940 PGRMC1O00264 195 aaKnown RBP18.71■□□□□ 0.59
USP40-207ENST00000450940 TMEM63AO94886 807 aa18.71■□□□□ 0.59
USP40-207ENST00000450940 HBQ1P09105 142 aa18.71■□□□□ 0.59
USP40-207ENST00000450940 VPS41P49754 854 aa18.71■□□□□ 0.59
USP40-207ENST00000450940 PMS2P54278 862 aa18.71■□□□□ 0.59
USP40-207ENST00000450940 GBX1Q14549 363 aa18.71■□□□□ 0.59
USP40-207ENST00000450940 CTSL3PQ5NE16 218 aa18.71■□□□□ 0.59
USP40-207ENST00000450940 RNF187Q5TA31 235 aaPredicted RBP18.71■□□□□ 0.59
USP40-207ENST00000450940 ZNF385CQ66K41 422 aaPredicted RBP18.71■□□□□ 0.59
USP40-207ENST00000450940 CCDC137Q6PK04 289 aaKnown RBP18.71■□□□□ 0.59
USP40-207ENST00000450940 ATG14Q6ZNE5 492 aa18.71■□□□□ 0.59
USP40-207ENST00000450940 PRICKLE2Q7Z3G6 844 aa18.71■□□□□ 0.59
USP40-207ENST00000450940 TMEM135Q86UB9 458 aa18.71■□□□□ 0.59
USP40-207ENST00000450940 SLC35F6Q8N357 371 aa18.71■□□□□ 0.59
USP40-207ENST00000450940 DNAJC22Q8N4W6 341 aa18.71■□□□□ 0.59
USP40-207ENST00000450940 OR2L8Q8NGY9 312 aa18.71■□□□□ 0.59
USP40-207ENST00000450940 COG1Q8WTW3 980 aa18.71■□□□□ 0.59
USP40-207ENST00000450940 THAP4Q8WY91 577 aa18.71■□□□□ 0.59
USP40-207ENST00000450940 CLIP3Q96DZ5 547 aa18.71■□□□□ 0.59
USP40-207ENST00000450940 OSBPL9Q96SU4 736 aa18.71■□□□□ 0.59
USP40-207ENST00000450940 NLNQ9BYT8 704 aa18.71■□□□□ 0.59
USP40-207ENST00000450940 XAB2Q9HCS7 855 aaKnown RBP18.71■□□□□ 0.59
USP40-207ENST00000450940 FAM237BA0A1B0GVD1 139 aa18.7■□□□□ 0.58
USP40-207ENST00000450940 ISM1B1AKI9 464 aa18.7■□□□□ 0.58
USP40-207ENST00000450940 E7EQ34 232 aa18.7■□□□□ 0.58
USP40-207ENST00000450940 CES2O00748 559 aa18.7■□□□□ 0.58
USP40-207ENST00000450940 ZSCAN12O43309 604 aa18.7■□□□□ 0.58
USP40-207ENST00000450940 ZNF749O43361 778 aa18.7■□□□□ 0.58
USP40-207ENST00000450940 HCRTR1O43613 425 aa18.7■□□□□ 0.58
USP40-207ENST00000450940 ESR1P03372 595 aa18.7■□□□□ 0.58
USP40-207ENST00000450940 OGNP20774 298 aaKnown RBP18.7■□□□□ 0.58
USP40-207ENST00000450940 CD9P21926 228 aa18.7■□□□□ 0.58
USP40-207ENST00000450940 EIF3BP55884 814 aaKnown RBP18.7■□□□□ 0.58
USP40-207ENST00000450940 RPS18P62269 152 aaKnown RBP18.7■□□□□ 0.58
USP40-207ENST00000450940 OTOAQ7RTW8 1153 aa18.7■□□□□ 0.58
USP40-207ENST00000450940 SYTL1Q8IYJ3 562 aa18.7■□□□□ 0.58
USP40-207ENST00000450940 ADAMTS17Q8TE56 1095 aa18.7■□□□□ 0.58
USP40-207ENST00000450940 SLC22A18Q96BI1 424 aa18.7■□□□□ 0.58
USP40-207ENST00000450940 AP1M2Q9Y6Q5 423 aa18.7■□□□□ 0.58
USP40-207ENST00000450940 MED13Q9UHV7 2174 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 PCM1Q15154 2024 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 MYO18BQ8IUG5 2567 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 UBR5O95071 2799 aaPredicted RBP18.69■□□□□ 0.58
USP40-207ENST00000450940 SDR42E2A6NKP2 422 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 GOLGA8KD6RF30 607 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 H3BMM5 538 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 GOLGA8TH3BQL2 631 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 RASGRF2O14827 1237 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 PFDN6O15212 129 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 PRICKLE3O43900 615 aaPredicted RBP18.69■□□□□ 0.58
USP40-207ENST00000450940 C1orf105O95561 183 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 S1PR4O95977 384 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 PAMP19021 973 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 ATP5DP30049 168 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 MAGEA3P43357 314 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 FNTAP49354 379 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 ANKRD20A4Q4UJ75 823 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 NEPROQ6NW34 567 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 FAM198BQ6UWH4 519 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 CENPUQ71F23 418 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 GPR135Q8IZ08 494 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 CFAP61Q8NHU2 1237 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 RAD51AP1Q96B01 352 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 KCNF1Q9H3M0 494 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 ENAMQ9NRM1 1142 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 MAN2B2Q9Y2E5 1009 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 MRFAP1Q9Y605 127 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 CCDC88CQ9P219 2028 aa18.69■□□□□ 0.58
USP40-207ENST00000450940 PHF2O75151 1096 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 RFPL1O75677 317 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 OR2B3O76000 313 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 FKBP9O95302 570 aa18.68■□□□□ 0.58
USP40-207ENST00000450940 MATN4O95460 622 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms