RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 MAFKO60675 156 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 GOT2P00505 430 aaKnown RBP8.39□□□□□ -1.07
HPS4-206ENST00000439453 FTH1P02794 183 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 CYP11A1P05108 521 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 KRT8P05787 483 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 IGFBP4P22692 258 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 MZF1P28698 734 aaPredicted RBP8.39□□□□□ -1.07
HPS4-206ENST00000439453 HOXD11P31277 338 aaPredicted RBP8.39□□□□□ -1.07
HPS4-206ENST00000439453 WNT3AP56704 352 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 TRIP4Q15650 581 aaPredicted RBP8.39□□□□□ -1.07
HPS4-206ENST00000439453 DUSP6Q16828 381 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 PLPP4Q5VZY2 271 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 TMEM179BQ7Z7N9 219 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 CCDC103Q8IW40 242 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 ARHGAP12Q8IWW6 846 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 MRPL43Q8N983 215 aaKnown RBP8.39□□□□□ -1.07
HPS4-206ENST00000439453 TTC16Q8NEE8 873 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 OR5K1Q8NHB7 308 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 PROKR1Q8TCW9 393 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 PROX1Q92786 737 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 PGAP3Q96FM1 320 aaPredicted RBP8.39□□□□□ -1.07
HPS4-206ENST00000439453 PPP1R2P1Q96PQ5 205 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 TCF25Q9BQ70 676 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 MIR1-1HGQ9H1L0 117 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 DUSP21Q9H596 190 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 KAT8Q9H7Z6 458 aaKnown RBP8.39□□□□□ -1.07
HPS4-206ENST00000439453 ACTR8Q9H981 624 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 CLEC1BQ9P126 229 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 OPTCQ9UBM4 332 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 DKK3Q9UBP4 350 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 FBXO10Q9UK96 956 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 INVSQ9Y283 1065 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 BPTFQ12830 3046 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 PABPN1LA6NDY0 278 aaKnown RBP8.39□□□□□ -1.07
HPS4-206ENST00000439453 AGAP5A6NIR3 686 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 MATN3O15232 486 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 PAPLNO95428 1278 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 FADS2O95864 444 aaKnown RBP8.39□□□□□ -1.07
HPS4-206ENST00000439453 MT-ND2P03891 347 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 FDXRP22570 491 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 DCTP40126 519 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 BRCC3P46736 316 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 ERVK-8P63133 956 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 SLC35A2P78381 396 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 YWHAHQ04917 246 aaPredicted RBP8.39□□□□□ -1.07
HPS4-206ENST00000439453 PRKG2Q13237 762 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 E2F2Q14209 437 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 CCDC85BQ15834 202 aaPredicted RBP8.39□□□□□ -1.07
HPS4-206ENST00000439453 FBXO48Q5FWF7 155 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 XKR7Q5GH72 579 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 FAM209AQ5JX71 171 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 EID3Q8N140 333 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 AADATQ8N5Z0 425 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 KIAA1958Q8N8K9 716 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 OR2T11Q8NH01 316 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 ITCHQ96J02 903 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 UROC1Q96N76 676 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 ZNF599Q96NL3 588 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 ATOH8Q96SQ7 321 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 MMP27Q9H306 513 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 GORASP2Q9H8Y8 452 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 ADGRE2Q9UHX3 823 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 EIF3LQ9Y262 564 aaKnown RBP8.39□□□□□ -1.07
HPS4-206ENST00000439453 ORC6Q9Y5N6 252 aa8.39□□□□□ -1.07
HPS4-206ENST00000439453 GRXCR2A6NFK2 248 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 OR51F1A6NGY5 319 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 EFCAB9A8MZ26 197 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 SUPT3HB4E1H0 165 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 SLC7A4O43246 635 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 F9P00740 461 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 CHRNB1P11230 501 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 JUNDP17535 347 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 ARL1P40616 181 aaPredicted RBP8.38□□□□□ -1.07
HPS4-206ENST00000439453 CXCR3P49682 368 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 SERPINH1P50454 418 aaKnown RBP8.38□□□□□ -1.07
HPS4-206ENST00000439453 ARSDP51689 593 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 MRPL58Q14197 206 aaKnown RBP8.38□□□□□ -1.07
HPS4-206ENST00000439453 ZNF404Q494X3 552 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 ATP6AP1LQ52LC2 224 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 UBE2UQ5VVX9 321 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 UTS2BQ765I0 119 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 LIMS2Q7Z4I7 341 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 SLC22A15Q8IZD6 547 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 GIPC2Q8TF65 315 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 EDEM1Q92611 657 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 ZNF583Q96ND8 569 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 NUSAP1Q9BXS6 441 aaKnown RBP8.38□□□□□ -1.07
HPS4-206ENST00000439453 DCSTAMPQ9H295 470 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 MFSD1Q9H3U5 465 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 AASSQ9UDR5 926 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 TMEFF2Q9UIK5 374 aaPredicted RBP8.38□□□□□ -1.07
HPS4-206ENST00000439453 DOCK8Q8NF50 2099 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 M0QZQ0 153 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 ADAM12O43184 909 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 USP17L7P0C7H9 530 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 GTF2E2P29084 291 aaKnown RBP8.38□□□□□ -1.07
HPS4-206ENST00000439453 PRDX3P30048 256 aaKnown RBP8.38□□□□□ -1.07
HPS4-206ENST00000439453 TIAL1Q01085 375 aaKnown RBP eCLIP8.38□□□□□ -1.07
HPS4-206ENST00000439453 FADDQ13158 208 aa8.38□□□□□ -1.07
HPS4-206ENST00000439453 RFX4Q33E94 735 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms