RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 TBC1D3CQ6IPX1 549 aa20.57■□□□□ 0.88
PTPRF-207ENST00000436724 FUNDC1Q8IVP5 155 aa20.57■□□□□ 0.88
PTPRF-207ENST00000436724 TBC1D3Q8IZP1 549 aaPredicted RBP20.57■□□□□ 0.88
PTPRF-207ENST00000436724 TCAIMQ8N3R3 496 aa20.57■□□□□ 0.88
PTPRF-207ENST00000436724 PPFIBP2Q8ND30 876 aa20.57■□□□□ 0.88
PTPRF-207ENST00000436724 FAM131CQ96AQ9 280 aa20.57■□□□□ 0.88
PTPRF-207ENST00000436724 LINC00615Q96LM1 132 aaPredicted RBP20.57■□□□□ 0.88
PTPRF-207ENST00000436724 KLQ9UEF7 1012 aa20.57■□□□□ 0.88
PTPRF-207ENST00000436724 A6NHS1 94 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 RNGTTO60942 597 aaKnown RBP20.56■□□□□ 0.88
PTPRF-207ENST00000436724 SLC16A8O95907 504 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 CATP04040 527 aaKnown RBP20.56■□□□□ 0.88
PTPRF-207ENST00000436724 EBLN1P0CF75 366 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 ACTR3P61158 418 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 STX1BP61266 288 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 CDC16Q13042 620 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 SGCGQ13326 291 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 AGERQ15109 404 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 CPSF6Q16630 551 aaKnown RBP eCLIP20.56■□□□□ 0.88
PTPRF-207ENST00000436724 TRMT5Q32P41 509 aaKnown RBP20.56■□□□□ 0.88
PTPRF-207ENST00000436724 TMEM259Q4ZIN3 620 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 SGO1Q5FBB7 561 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 TMEM31Q5JXX7 168 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 LRRC70Q7Z2Q7 622 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 SFRP1Q8N474 314 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 OR2L2Q8NH16 312 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 MRGPRX1Q96LB2 322 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 PHF7Q9BWX1 381 aaPredicted RBP20.56■□□□□ 0.88
PTPRF-207ENST00000436724 C1QTNF2Q9BXJ5 285 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 WDR26Q9H7D7 661 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 ACTR8Q9H981 624 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 INTS7Q9NVH2 962 aaKnown RBP20.56■□□□□ 0.88
PTPRF-207ENST00000436724 PRAMEF4O60810 478 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 VPS4BO75351 444 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 PPP2CBP62714 309 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 PPP2CAP67775 309 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 MRPS21P82921 87 aaKnown RBP20.56■□□□□ 0.88
PTPRF-207ENST00000436724 C6orf136Q5SQH8 315 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 PRAMEF9Q5VWM5 478 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 DSELQ8IZU8 1212 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 LMNTD1Q8N9Z9 388 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 FBXL8Q96CD0 374 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 MTFMTQ96DP5 389 aaKnown RBP20.56■□□□□ 0.88
PTPRF-207ENST00000436724 FOPNLQ96NB1 174 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 PKP4Q99569 1192 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 TEX101Q9BY14 249 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 SLC17A9Q9BYT1 436 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 STOX2Q9P2F5 926 aaPredicted RBP20.56■□□□□ 0.88
PTPRF-207ENST00000436724 PACSIN3Q9UKS6 424 aa20.56■□□□□ 0.88
PTPRF-207ENST00000436724 MGAT4DA6NG13 374 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 CIB2O75838 187 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 PDE5AO76074 875 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 CLDN9O95484 217 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 ERFP50548 548 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 CCINQ13939 588 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 OGFOD2Q6N063 350 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 KYQ8NBH2 561 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 C17orf113A0A1B0GUU1 675 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 FBP2O00757 339 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 SLC31A1O15431 190 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 C1orf105O95561 183 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 FUCA1P04066 466 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 TRIM23P36406 574 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 TBL3Q12788 808 aaKnown RBP20.55■□□□□ 0.88
PTPRF-207ENST00000436724 AGTRAPQ6RW13 159 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 KIAA1324Q6UXG2 1013 aaKnown RBP20.55■□□□□ 0.88
PTPRF-207ENST00000436724 FNDC5Q8NAU1 212 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 FAM3CQ92520 227 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 MED8Q96G25 268 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 RIC8BQ9NVN3 520 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 TRPS1Q9UHF7 1281 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 NDRG2Q9UN36 371 aaKnown RBP20.55■□□□□ 0.88
PTPRF-207ENST00000436724 GPR45Q9Y5Y3 372 aa20.55■□□□□ 0.88
PTPRF-207ENST00000436724 NDUFV2P19404 249 aa20.54■□□□□ 0.88
PTPRF-207ENST00000436724 IMPA1P29218 277 aa20.54■□□□□ 0.88
PTPRF-207ENST00000436724 ATP4BP51164 291 aa20.54■□□□□ 0.88
PTPRF-207ENST00000436724 NAE1Q13564 534 aa20.54■□□□□ 0.88
PTPRF-207ENST00000436724 NR6A1Q15406 480 aa20.54■□□□□ 0.88
PTPRF-207ENST00000436724 ATP6AP1LQ52LC2 224 aa20.54■□□□□ 0.88
PTPRF-207ENST00000436724 AMZ2Q86W34 360 aa20.54■□□□□ 0.88
PTPRF-207ENST00000436724 HM13Q8TCT9 377 aa20.54■□□□□ 0.88
PTPRF-207ENST00000436724 TEX37Q96LM6 180 aa20.54■□□□□ 0.88
PTPRF-207ENST00000436724 CCDC138Q96M89 665 aa20.54■□□□□ 0.88
PTPRF-207ENST00000436724 FBRSQ9HAH7 460 aa20.54■□□□□ 0.88
PTPRF-207ENST00000436724 SDR39U1Q9NRG7 319 aaPredicted RBP20.54■□□□□ 0.88
PTPRF-207ENST00000436724 DNAJC11Q9NVH1 559 aa20.54■□□□□ 0.88
PTPRF-207ENST00000436724 SUFUQ9UMX1 484 aa20.54■□□□□ 0.88
PTPRF-207ENST00000436724 PSMD13Q9UNM6 376 aa20.54■□□□□ 0.88
PTPRF-207ENST00000436724 CCL27Q9Y4X3 112 aa20.54■□□□□ 0.88
PTPRF-207ENST00000436724 LSM1O15116 133 aaKnown RBP20.53■□□□□ 0.88
PTPRF-207ENST00000436724 SNRPB2P08579 225 aaKnown RBP20.53■□□□□ 0.88
PTPRF-207ENST00000436724 HMGCS1Q01581 520 aa20.53■□□□□ 0.88
PTPRF-207ENST00000436724 RPS6KA2Q15349 733 aa20.53■□□□□ 0.88
PTPRF-207ENST00000436724 KIAA1161Q6NSJ0 714 aa20.53■□□□□ 0.88
PTPRF-207ENST00000436724 LRRTM4Q86VH4 590 aa20.53■□□□□ 0.88
PTPRF-207ENST00000436724 HORMAD1Q86X24 394 aa20.53■□□□□ 0.88
PTPRF-207ENST00000436724 MIER2Q8N344 545 aa20.53■□□□□ 0.88
PTPRF-207ENST00000436724 FLCNQ8NFG4 579 aa20.53■□□□□ 0.88
PTPRF-207ENST00000436724 CCT7Q99832 543 aa20.53■□□□□ 0.88
PTPRF-207ENST00000436724 EFCAB1Q9HAE3 211 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms