RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 PLEKHG4BQ96PX9 1271 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 TRAF6Q9Y4K3 522 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 OR1A2Q9Y585 309 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 TEX264Q9Y6I9 313 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 AP1S2P56377 157 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 RBBP4Q09028 425 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 FRG1Q14331 258 aaKnown RBP12.64□□□□□ -0.39
PTCH1-207ENST00000429896 ZNF542PQ5EBM4 170 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 DCUN1D3Q8IWE4 304 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 CDK20Q8IZL9 346 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 ZCCHC10Q8TBK6 192 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 SMPDL3AQ92484 453 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 PMM1Q92871 262 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 NT5C3BQ969T7 300 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 VN1R3Q9BXE9 311 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 PRSS16Q9NQE7 514 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 CCDC167Q9P0B6 97 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 AGPSO00116 658 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 PSMA3P25788 255 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 CCR2P41597 374 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 PRAMEF14Q5SWL7 426 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 PRAMEF13Q5VWM6 474 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 KIAA0895LQ68EN5 471 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 LILRA6Q6PI73 481 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 RLN3Q8WXF3 142 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 MECRQ9BV79 373 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 TOR4AQ9NXH8 423 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 ARMCX1Q9P291 453 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 AHSGP02765 367 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 GLULP15104 373 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 STX4Q12846 297 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 LCP2Q13094 533 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 GNA13Q14344 377 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 KLHL28Q9NXS3 571 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 NME7Q9Y5B8 376 aa12.64□□□□□ -0.39
PTCH1-207ENST00000429896 A8MU76 341 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 KRT33AO76009 404 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 BPIP17213 487 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 PREPP48147 710 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 MSS51Q4VC12 460 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 ZCCHC8Q6NZY4 707 aaKnown RBP12.63□□□□□ -0.39
PTCH1-207ENST00000429896 TMEM145Q8NBT3 493 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 SIGLEC10Q96LC7 697 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 LGALS13Q9UHV8 139 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 HS3ST2Q9Y278 367 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 GREB1LQ9C091 1923 aaPredicted RBP12.63□□□□□ -0.39
PTCH1-207ENST00000429896 LYPLA1O75608 230 aaPredicted RBP12.63□□□□□ -0.39
PTCH1-207ENST00000429896 RPL34P49207 117 aaKnown RBP12.63□□□□□ -0.39
PTCH1-207ENST00000429896 INAQ16352 499 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 FBXO48Q5FWF7 155 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 BHLHB9Q6PI77 547 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 TTLQ8NG68 377 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 SLC32A1Q9H598 525 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 ELL3Q9HB65 397 aaPredicted RBP12.63□□□□□ -0.39
PTCH1-207ENST00000429896 CLDN4O14493 209 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 TIMP2P16035 220 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 CD68P34810 354 aaPredicted RBP12.63□□□□□ -0.39
PTCH1-207ENST00000429896 BUD31P41223 144 aaPredicted RBP12.63□□□□□ -0.39
PTCH1-207ENST00000429896 GSTM4Q03013 218 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 PRMT9Q6P2P2 845 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 KLHL17Q6TDP4 642 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 HSPA12BQ96MM6 686 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 MRPS26Q9BYN8 205 aaKnown RBP12.63□□□□□ -0.39
PTCH1-207ENST00000429896 IL21Q9HBE4 155 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 FAM220BPB1ANY3 271 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 F7P08709 466 aaPredicted RBP12.63□□□□□ -0.39
PTCH1-207ENST00000429896 EPORP19235 508 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 CLK3P49761 638 aaKnown RBP12.63□□□□□ -0.39
PTCH1-207ENST00000429896 PKNOX1P55347 436 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 SQLEQ14534 574 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 LRRC74BQ6ZQY2 392 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 CAND1Q86VP6 1230 aaKnown RBP12.63□□□□□ -0.39
PTCH1-207ENST00000429896 ZC3HC1Q86WB0 502 aaKnown RBP12.63□□□□□ -0.39
PTCH1-207ENST00000429896 FSTL5Q8N475 847 aaPredicted RBP12.63□□□□□ -0.39
PTCH1-207ENST00000429896 ZNF624Q9P2J8 865 aaPredicted RBP12.63□□□□□ -0.39
PTCH1-207ENST00000429896 NPIPB15A6NHN6 443 aaPredicted RBP12.63□□□□□ -0.39
PTCH1-207ENST00000429896 NTRK1P04629 796 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 KCNJ9Q92806 393 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 PPCDCQ96CD2 204 aa12.63□□□□□ -0.39
PTCH1-207ENST00000429896 LRRC14BA6NHZ5 514 aa12.62□□□□□ -0.39
PTCH1-207ENST00000429896 MBTPS2O43462 519 aa12.62□□□□□ -0.39
PTCH1-207ENST00000429896 KIF1CO43896 1103 aaKnown RBP12.62□□□□□ -0.39
PTCH1-207ENST00000429896 OR6B1O95007 311 aa12.62□□□□□ -0.39
PTCH1-207ENST00000429896 EPN2O95208 641 aa12.62□□□□□ -0.39
PTCH1-207ENST00000429896 ZNF37AP17032 561 aaPredicted RBP12.62□□□□□ -0.39
PTCH1-207ENST00000429896 AGXTP21549 392 aa12.62□□□□□ -0.39
PTCH1-207ENST00000429896 DRD4P21917 467 aa12.62□□□□□ -0.39
PTCH1-207ENST00000429896 DNAJB1P25685 340 aa12.62□□□□□ -0.39
PTCH1-207ENST00000429896 SHMT2P34897 504 aa12.62□□□□□ -0.39
PTCH1-207ENST00000429896 CRATP43155 626 aa12.62□□□□□ -0.39
PTCH1-207ENST00000429896 SEMA3AQ14563 771 aa12.62□□□□□ -0.39
PTCH1-207ENST00000429896 SLC14A2Q15849 920 aa12.62□□□□□ -0.39
PTCH1-207ENST00000429896 SLC25A24Q6NUK1 477 aa12.62□□□□□ -0.39
PTCH1-207ENST00000429896 FAM20CQ8IXL6 584 aa12.62□□□□□ -0.39
PTCH1-207ENST00000429896 OXR1Q8N573 874 aa12.62□□□□□ -0.39
PTCH1-207ENST00000429896 RTP4Q96DX8 246 aa12.62□□□□□ -0.39
PTCH1-207ENST00000429896 RNF145Q96MT1 663 aa12.62□□□□□ -0.39
PTCH1-207ENST00000429896 DCUN1D5Q9BTE7 237 aa12.62□□□□□ -0.39
PTCH1-207ENST00000429896 SLC25A23Q9BV35 468 aa12.62□□□□□ -0.39
PTCH1-207ENST00000429896 TMEM109Q9BVC6 243 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms