RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 MGAT4DA6NG13 374 aa25.8■■□□□ 1.72
LDB1-202ENST00000425280 BBIP1A8MTZ0 92 aa25.8■■□□□ 1.72
LDB1-202ENST00000425280 SLC28A1O00337 649 aa25.8■■□□□ 1.72
LDB1-202ENST00000425280 RGS14O43566 566 aa25.8■■□□□ 1.72
LDB1-202ENST00000425280 PRAMEF4O60810 478 aa25.8■■□□□ 1.72
LDB1-202ENST00000425280 C1orf105O95561 183 aa25.8■■□□□ 1.72
LDB1-202ENST00000425280 DNTTP04053 509 aa25.8■■□□□ 1.72
LDB1-202ENST00000425280 PSME3P61289 254 aa25.8■■□□□ 1.72
LDB1-202ENST00000425280 NFE2L1Q14494 772 aa25.8■■□□□ 1.72
LDB1-202ENST00000425280 IRF4Q15306 451 aa25.8■■□□□ 1.72
LDB1-202ENST00000425280 CPSF6Q16630 551 aaKnown RBP eCLIP25.8■■□□□ 1.72
LDB1-202ENST00000425280 PRAMEF9Q5VWM5 478 aa25.8■■□□□ 1.72
LDB1-202ENST00000425280 RETREG3Q86VR2 466 aa25.8■■□□□ 1.72
LDB1-202ENST00000425280 L3MBTL4Q8NA19 623 aa25.8■■□□□ 1.72
LDB1-202ENST00000425280 KLK6Q92876 244 aa25.8■■□□□ 1.72
LDB1-202ENST00000425280 PPP3R2Q96LZ3 170 aa25.8■■□□□ 1.72
LDB1-202ENST00000425280 C8orf33Q9H7E9 229 aaPredicted RBP25.8■■□□□ 1.72
LDB1-202ENST00000425280 SLC52A3Q9NQ40 469 aa25.8■■□□□ 1.72
LDB1-202ENST00000425280 LIMD1Q9UGP4 676 aa25.8■■□□□ 1.72
LDB1-202ENST00000425280 PLRG1O43660 514 aaKnown RBP25.79■■□□□ 1.72
LDB1-202ENST00000425280 DRD1P21728 446 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 ZFP36L2P47974 494 aaKnown RBP25.79■■□□□ 1.72
LDB1-202ENST00000425280 ERFP50548 548 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 THOP1P52888 689 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 UFM1P61960 85 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 PLOD1Q02809 727 aaPredicted RBP25.79■■□□□ 1.72
LDB1-202ENST00000425280 GRSF1Q12849 480 aaKnown RBP eCLIP25.79■■□□□ 1.72
LDB1-202ENST00000425280 INPP5AQ14642 412 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 ZNF423Q2M1K9 1284 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 VPS26BQ4G0F5 336 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 IER5LQ5T953 404 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 FAM83HQ6ZRV2 1179 aaPredicted RBP25.79■■□□□ 1.72
LDB1-202ENST00000425280 HOMEZQ8IX15 550 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 TP53I13Q8NBR0 393 aaPredicted RBP25.79■■□□□ 1.72
LDB1-202ENST00000425280 FBXO15Q8NCQ5 510 aaPredicted RBP25.79■■□□□ 1.72
LDB1-202ENST00000425280 OR14C36Q8NHC7 312 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 TEX101Q9BY14 249 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 INTS7Q9NVH2 962 aaKnown RBP25.79■■□□□ 1.72
LDB1-202ENST00000425280 SLC16A8O95907 504 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 PAK4O96013 591 aaPredicted RBP25.79■■□□□ 1.72
LDB1-202ENST00000425280 KRT6AP02538 564 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 KRT6BP04259 564 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 IMPA1P29218 277 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 KRT6CP48668 564 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 CCR3P51677 355 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 RPS21P63220 83 aaKnown RBP25.79■■□□□ 1.72
LDB1-202ENST00000425280 CEACAM7Q14002 265 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 RFTN2Q52LD8 501 aaPredicted RBP25.79■■□□□ 1.72
LDB1-202ENST00000425280 HACD2Q6Y1H2 254 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 TRMT11Q7Z4G4 463 aaKnown RBP25.79■■□□□ 1.72
LDB1-202ENST00000425280 THOC6Q86W42 341 aaKnown RBP25.79■■□□□ 1.72
LDB1-202ENST00000425280 KLHDC8AQ8IYD2 350 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 C1QTNF2Q9BXJ5 285 aa25.79■■□□□ 1.72
LDB1-202ENST00000425280 PRR23AA6NEV1 266 aa25.78■■□□□ 1.72
LDB1-202ENST00000425280 HMGCS1Q01581 520 aa25.78■■□□□ 1.72
LDB1-202ENST00000425280 NAE1Q13564 534 aa25.78■■□□□ 1.72
LDB1-202ENST00000425280 MTFMTQ96DP5 389 aaKnown RBP25.78■■□□□ 1.72
LDB1-202ENST00000425280 DPEP2Q9H4A9 486 aa25.78■■□□□ 1.72
LDB1-202ENST00000425280 ZIM2Q9NZV7 527 aa25.78■■□□□ 1.72
LDB1-202ENST00000425280 NDUFAF1Q9Y375 327 aa25.78■■□□□ 1.72
LDB1-202ENST00000425280 SLC22A3O75751 556 aa25.78■■□□□ 1.72
LDB1-202ENST00000425280 TEAD1P28347 426 aa25.78■■□□□ 1.72
LDB1-202ENST00000425280 CCNIQ14094 377 aa25.78■■□□□ 1.72
LDB1-202ENST00000425280 LAYNQ6UX15 382 aa25.78■■□□□ 1.72
LDB1-202ENST00000425280 OSBPL6Q9BZF3 934 aa25.78■■□□□ 1.72
LDB1-202ENST00000425280 MAP10Q9P2G4 905 aa25.78■■□□□ 1.72
LDB1-202ENST00000425280 OR1A2Q9Y585 309 aa25.78■■□□□ 1.72
LDB1-202ENST00000425280 A0A1W2PQU0 124 aa25.77■■□□□ 1.72
LDB1-202ENST00000425280 PDYNP01213 254 aa25.77■■□□□ 1.72
LDB1-202ENST00000425280 TRIM23P36406 574 aa25.77■■□□□ 1.72
LDB1-202ENST00000425280 RCAN2Q14206 197 aa25.77■■□□□ 1.72
LDB1-202ENST00000425280 LRIT3Q3SXY7 679 aa25.77■■□□□ 1.72
LDB1-202ENST00000425280 TMEM259Q4ZIN3 620 aa25.77■■□□□ 1.72
LDB1-202ENST00000425280 IL23RQ5VWK5 629 aa25.77■■□□□ 1.72
LDB1-202ENST00000425280 C8orf82Q6P1X6 216 aaPredicted RBP25.77■■□□□ 1.72
LDB1-202ENST00000425280 LRRTM4Q86VH4 590 aa25.77■■□□□ 1.72
LDB1-202ENST00000425280 RGL4Q8IZJ4 473 aa25.77■■□□□ 1.72
LDB1-202ENST00000425280 PCYOX1LQ8NBM8 494 aa25.77■■□□□ 1.72
LDB1-202ENST00000425280 OR56A3Q8NH54 315 aa25.77■■□□□ 1.72
LDB1-202ENST00000425280 TSPEARQ8WU66 669 aa25.77■■□□□ 1.72
LDB1-202ENST00000425280 DNASE1L2Q92874 299 aa25.77■■□□□ 1.72
LDB1-202ENST00000425280 MED8Q96G25 268 aa25.77■■□□□ 1.72
LDB1-202ENST00000425280 WDR26Q9H7D7 661 aa25.77■■□□□ 1.72
LDB1-202ENST00000425280 NOP53Q9NZM5 478 aaKnown RBP25.77■■□□□ 1.72
LDB1-202ENST00000425280 SLC23A2Q9UGH3 650 aa25.77■■□□□ 1.72
LDB1-202ENST00000425280 SNX6Q9UNH7 406 aa25.77■■□□□ 1.72
LDB1-202ENST00000425280 POLR3HQ9Y535 204 aaPredicted RBP25.77■■□□□ 1.72
LDB1-202ENST00000425280 E7ENX8 843 aa25.76■■□□□ 1.71
LDB1-202ENST00000425280 SLC2A4P14672 509 aa25.76■■□□□ 1.71
LDB1-202ENST00000425280 GNAZP19086 355 aa25.76■■□□□ 1.71
LDB1-202ENST00000425280 ACADLP28330 430 aa25.76■■□□□ 1.71
LDB1-202ENST00000425280 ADPRHP54922 357 aa25.76■■□□□ 1.71
LDB1-202ENST00000425280 CHIT1Q13231 466 aa25.76■■□□□ 1.71
LDB1-202ENST00000425280 SGCGQ13326 291 aa25.76■■□□□ 1.71
LDB1-202ENST00000425280 CCDC6Q16204 474 aa25.76■■□□□ 1.71
LDB1-202ENST00000425280 KIAA1161Q6NSJ0 714 aa25.76■■□□□ 1.71
LDB1-202ENST00000425280 AMZ2Q86W34 360 aa25.76■■□□□ 1.71
LDB1-202ENST00000425280 PPFIBP2Q8ND30 876 aa25.76■■□□□ 1.71
LDB1-202ENST00000425280 ROPN1LQ96C74 230 aa25.76■■□□□ 1.71
LDB1-202ENST00000425280 SPDL1Q96EA4 605 aa25.76■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms