RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 MT-CYBP00156 380 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-204ENST00000423058 PET100P0DJ07 73 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 CYP3A7P24462 503 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 RIDAP52758 137 aaKnown RBP6.74□□□□□ -1.33
SCN1A-204ENST00000423058 MAPK10P53779 464 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 SLITRK4Q8IW52 837 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 APOLD1Q96LR9 279 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF570Q96NI8 536 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 FAM221BA6H8Z2 402 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 TBX1O43435 398 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 GJB6O95452 261 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 HCKP08631 526 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF84P51523 738 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 SEC23BQ15437 767 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 CARTPTQ16568 116 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF776Q68DI1 518 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-204ENST00000423058 BEND4Q6ZU67 534 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 ARHGAP22Q7Z5H3 698 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 RAB43Q86YS6 212 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 ZNF101Q8IZC7 436 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 HORMAD2Q8N7B1 307 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 ZBTB10Q96DT7 871 aa6.74□□□□□ -1.33
SCN1A-204ENST00000423058 OR2AT4A6NND4 320 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ACOT7O00154 380 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 CYB5BO43169 146 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 FADS2O95864 444 aaKnown RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 TSPAN8P19075 237 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 AQP1P29972 269 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 SEMA5AQ13591 1074 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 DPY19L1Q2PZI1 675 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 BRAT1Q6PJG6 821 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 CNTRLQ7Z7A1 2325 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 CUZD1Q86UP6 607 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 LRRTM4Q86VH4 590 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 LAS2Q8IYD9 372 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 SLC25A36Q96CQ1 311 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 OR51V1Q9H2C8 321 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 KCNF1Q9H3M0 494 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 PLK2Q9NYY3 685 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 EVLQ9UI08 416 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 PADI3Q9ULW8 664 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ANKRD26Q9UPS8 1709 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ARPC2O15144 300 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 EPHB6O15197 1021 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ANXA3P12429 323 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 CD44P16070 742 aaKnown RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ATF6P18850 670 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 CCNOP22674 350 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 LSM3P62310 102 aaKnown RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 IL10RBQ08334 325 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ZFP69Q49AA0 526 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 PRSS58Q8IYP2 241 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 PNPT1Q8TCS8 783 aaKnown RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 CARS2Q9HA77 564 aaKnown RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ALG5Q9Y673 324 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 KANTRA0A1W2PQU2 76 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 YDJCA8MPS7 323 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 FTCDNL1E5RQL4 147 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 TP73O15350 636 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ORC5O43913 435 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 B4GALT4O60513 344 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 RAB36O95755 333 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 ELNP15502 786 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 TPSB2P20231 275 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 RPS3AP61247 264 aaKnown RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 PRKCDQ05655 676 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 TPSAB1Q15661 275 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 TTMPQ5BVD1 217 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 INTS6LQ5JSJ4 861 aaKnown RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 FOXR2Q6PJQ5 311 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 C6orf120Q7Z4R8 191 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 GALNT5Q7Z7M9 940 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 CYP2W1Q8TAV3 490 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 NAT14Q8WUY8 206 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 FAM163AQ96GL9 167 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 SLC5A7Q9GZV3 580 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 BTBD1Q9H0C5 482 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 SLC25A51Q9H1U9 297 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 SPATA7Q9P0W8 599 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 CYTH4Q9UIA0 394 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 CD84Q9UIB8 345 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 SLC7A11Q9UPY5 501 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 PCDHGA6Q9Y5G7 932 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 HEMK1Q9Y5R4 338 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 DAPL1A0PJW8 107 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 NPIPA2E9PIF3 369 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 NPIPA3F8WFD2 350 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 MATN2O00339 956 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 TP53I11O14683 189 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 NDUFS4O43181 175 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 CLPXO76031 633 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 HNRNPLP14866 589 aaKnown RBP eCLIP6.73□□□□□ -1.332e-7■■■□□ 17.7
SCN1A-204ENST00000423058 KCNJ2P63252 427 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 MELKQ14680 651 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 PDK3Q15120 406 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 DLG2Q15700 870 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 C2orf27AQ580R0 203 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 PRPF38BQ5VTL8 546 aaKnown RBP6.73□□□□□ -1.33
SCN1A-204ENST00000423058 MLIPQ5VWP3 458 aa6.73□□□□□ -1.33
SCN1A-204ENST00000423058 IL22RA1Q8N6P7 574 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms