RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 LDAHQ9H6V9 325 aa4.5□□□□□ -1.69
SF3B1-202ENST00000409915 LRRC4Q9HBW1 653 aa4.5□□□□□ -1.69
SF3B1-202ENST00000409915 SEMA4BQ9NPR2 832 aaPredicted RBP4.5□□□□□ -1.69
SF3B1-202ENST00000409915 HEBP1Q9NRV9 189 aa4.5□□□□□ -1.69
SF3B1-202ENST00000409915 GKN1Q9NS71 199 aa4.5□□□□□ -1.69
SF3B1-202ENST00000409915 PPP1R14DQ9NXH3 145 aa4.5□□□□□ -1.69
SF3B1-202ENST00000409915 MOCS1Q9NZB8 636 aa4.5□□□□□ -1.69
SF3B1-202ENST00000409915 IL37Q9NZH6 218 aa4.5□□□□□ -1.69
SF3B1-202ENST00000409915 EHD2Q9NZN4 543 aa4.5□□□□□ -1.69
SF3B1-202ENST00000409915 CFAP97Q9P2B7 532 aa4.5□□□□□ -1.69
SF3B1-202ENST00000409915 SLC25A10Q9UBX3 287 aaPredicted RBP4.5□□□□□ -1.69
SF3B1-202ENST00000409915 ZC3H7BQ9UGR2 993 aaKnown RBP4.5□□□□□ -1.69
SF3B1-202ENST00000409915 RAPGEFL1Q9UHV5 662 aa4.5□□□□□ -1.69
SF3B1-202ENST00000409915 SLCO3A1Q9UIG8 710 aa4.5□□□□□ -1.69
SF3B1-202ENST00000409915 KIAA1257Q9ULG3 409 aa4.5□□□□□ -1.69
SF3B1-202ENST00000409915 CHMP2BQ9UQN3 213 aa4.5□□□□□ -1.69
SF3B1-202ENST00000409915 HEY1Q9Y5J3 304 aa4.5□□□□□ -1.69
SF3B1-202ENST00000409915 NOX1Q9Y5S8 564 aa4.5□□□□□ -1.69
SF3B1-202ENST00000409915 WNT6Q9Y6F9 365 aa4.5□□□□□ -1.69
SF3B1-202ENST00000409915 MYO10Q9HD67 2058 aa4.5□□□□□ -1.69
SF3B1-202ENST00000409915 NUP210Q8TEM1 1887 aaPredicted RBP4.49□□□□□ -1.69
SF3B1-202ENST00000409915 COL4A2P08572 1712 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 ZDBF2Q9HCK1 2354 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 MYH10P35580 1976 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 FAM237BA0A1B0GVD1 139 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 OTOL1A6NHN0 477 aaPredicted RBP4.49□□□□□ -1.69
SF3B1-202ENST00000409915 SHISA7A6NL88 538 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 LRRC53A6NM62 1247 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 CENPBD1B2RD01 187 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 TMEM114B3SHH9 223 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 LEFTY2O00292 366 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 ALOX15BO15296 676 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 PRPF4O43172 522 aaKnown RBP eCLIP4.49□□□□□ -1.69
SF3B1-202ENST00000409915 PAPSS1O43252 624 aaPredicted RBP4.49□□□□□ -1.69
SF3B1-202ENST00000409915 MSI1O43347 362 aaKnown RBP4.49□□□□□ -1.69
SF3B1-202ENST00000409915 MED7O43513 233 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 SLC25A17O43808 307 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 GRAP2O75791 330 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 RPP40O75818 363 aaKnown RBP4.49□□□□□ -1.69
SF3B1-202ENST00000409915 TRIM16O95361 564 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 WISP1O95388 367 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 VIPP01282 170 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 KRT14P02533 472 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 ERBB2P04626 1255 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 CYP1A1P04798 512 aaPredicted RBP4.49□□□□□ -1.69
SF3B1-202ENST00000409915 ABCB1P08183 1280 aaPredicted RBP4.49□□□□□ -1.69
SF3B1-202ENST00000409915 GAAP10253 952 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 CDK4P11802 303 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 PRLRP16471 622 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 CTRB1P17538 263 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 TPH1P17752 444 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 DDCP20711 480 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 PRKCHP24723 683 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 NOS3P29474 1203 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 HMOX2P30519 316 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 MSX2P35548 267 aaPredicted RBP4.49□□□□□ -1.69
SF3B1-202ENST00000409915 ACAA2P42765 397 aaKnown RBP4.49□□□□□ -1.69
SF3B1-202ENST00000409915 GPD2P43304 727 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 CCR10P46092 362 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 ASMTP46597 345 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 ATP5OP48047 213 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 CAMLGP49069 296 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 ZNF81P51508 661 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 VCPP55072 806 aaKnown RBP4.49□□□□□ -1.69
SF3B1-202ENST00000409915 CDH15P55291 814 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 DAOAP59103 153 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 GMFBP60983 142 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 YWHAGP61981 247 aaKnown RBP eCLIP4.49□□□□□ -1.69
SF3B1-202ENST00000409915 PITX1P78337 314 aaPredicted RBP4.49□□□□□ -1.69
SF3B1-202ENST00000409915 POU6F2P78424 691 aaPredicted RBP4.49□□□□□ -1.69
SF3B1-202ENST00000409915 KCNJ10P78508 379 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 SLC7A9P82251 487 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 GBE1Q04446 702 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 GOLGA8FQ08AF8 430 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 GOLGA8DPQ0D2H9 430 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 FCHO2Q0JRZ9 810 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 TRAP1Q12931 704 aaKnown RBP4.49□□□□□ -1.69
SF3B1-202ENST00000409915 ARHGEF7Q14155 803 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 STILQ15468 1287 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 MLF2Q15773 248 aaPredicted RBP4.49□□□□□ -1.69
SF3B1-202ENST00000409915 MEP1BQ16820 701 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 C15orf59Q2T9L4 293 aaPredicted RBP4.49□□□□□ -1.69
SF3B1-202ENST00000409915 PTPN20Q4JDL3 420 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 EMC4Q5J8M3 183 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 TMEM31Q5JXX7 168 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 C10orf120Q5SQS8 335 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 CCNJQ5T5M9 372 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 KCTD16Q68DU8 428 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 CTRB2Q6GPI1 263 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 TPRG1Q6ZUI0 275 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 FAM183BPQ6ZVS7 135 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 TRPM8Q7Z2W7 1104 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 DGLUCYQ7Z3D6 616 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 TMEM200AQ86VY9 491 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 MAP7D3Q8IWC1 876 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 MFSD6LQ8IWD5 586 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 UBALD2Q8IYN6 164 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 PQLC1Q8N2U9 271 aa4.49□□□□□ -1.69
SF3B1-202ENST00000409915 CPSF7Q8N684 471 aaKnown RBP4.49□□□□□ -1.69
SF3B1-202ENST00000409915 RTL3Q8N8U3 475 aaKnown RBP4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms