RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 EEDO75530 441 aaKnown RBP13.07□□□□□ -0.32
VPS54-203ENST00000409558 CAPN15O75808 1086 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 SHMT2P34897 504 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 HNF4AP41235 474 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 IL5RAQ01344 420 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 TTLL9Q3SXZ7 439 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 KCTD21Q4G0X4 260 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 XKR7Q5GH72 579 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 DLEU7Q6UYE1 221 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 CHST9Q7L1S5 443 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 VTCN1Q7Z7D3 282 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 AQP12AQ8IXF9 295 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 NETO1Q8TDF5 533 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 SLC47A1Q96FL8 570 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 RIOK2Q9BVS4 552 aaKnown RBP13.07□□□□□ -0.32
VPS54-203ENST00000409558 ELAC1Q9H777 363 aaKnown RBP13.07□□□□□ -0.32
VPS54-203ENST00000409558 ZNF696Q9H7X3 374 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 MAGEE1Q9HCI5 957 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 SARDHQ9UL12 918 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 GNG14A0A1W2PPG7 69 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 MATN4O95460 622 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 COL6A1P12109 1028 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 HSD17B1P14061 328 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 ENTPD1P49961 510 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 PTSQ03393 145 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 BNIP3Q12983 259 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 ACOX1Q15067 660 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 SYT12Q8IV01 421 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 SNX19Q92543 992 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 PANX1Q96RD7 426 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 POPDC3Q9HBV1 291 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 ANKRD36A6QL64 1941 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 G3V2T6 193 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 CLDN9O95484 217 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 FSHRP23945 695 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 SLC14A1Q13336 389 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 LCN8Q6JVE9 175 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 CRTC3Q6UUV7 619 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 USP45Q70EL2 814 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 OR52J3Q8NH60 311 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 C12orf43Q96C57 262 aaKnown RBP13.07□□□□□ -0.32
VPS54-203ENST00000409558 TMEM121BQ9BXQ6 578 aaPredicted RBP13.07□□□□□ -0.32
VPS54-203ENST00000409558 PAIP1Q9H074 479 aaKnown RBP13.07□□□□□ -0.32
VPS54-203ENST00000409558 TOR3AQ9H497 397 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 PREBQ9HCU5 417 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 SLC25A37Q9NYZ2 338 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 KIAA1522Q9P206 1035 aaPredicted RBP13.07□□□□□ -0.32
VPS54-203ENST00000409558 NUMA1Q14980 2115 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 J3QRK9 145 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 CXCR6O00574 342 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 RFXANKO14593 260 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 FGF18O76093 207 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 BMP2P12643 396 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 VEGFBP49765 207 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 AP1S1P61966 158 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 OCA2Q04671 838 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 FGD3Q5JSP0 725 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 EFL1Q7Z2Z2 1120 aaKnown RBP13.07□□□□□ -0.32
VPS54-203ENST00000409558 SYTL1Q8IYJ3 562 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 FBXL8Q96CD0 374 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 PPP3R2Q96LZ3 170 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 ZNF583Q96ND8 569 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 BARD1Q99728 777 aaKnown RBP13.07□□□□□ -0.32
VPS54-203ENST00000409558 ABCD2Q9UBJ2 740 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 WASH3PC4AMC7 463 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 FKTNO75072 461 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 XYLBO75191 536 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 DEAF1O75398 565 aaPredicted RBP13.06□□□□□ -0.32
VPS54-203ENST00000409558 ZNF182P17025 639 aaPredicted RBP13.06□□□□□ -0.32
VPS54-203ENST00000409558 MAP4P27816 1152 aaKnown RBP13.06□□□□□ -0.32
VPS54-203ENST00000409558 WASP42768 502 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 B4GALNT1Q00973 533 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 EMX2Q04743 252 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 SMARCB1Q12824 385 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 DYNC1I2Q13409 638 aaKnown RBP13.06□□□□□ -0.32
VPS54-203ENST00000409558 OGFOD2Q6N063 350 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 CES5AQ6NT32 575 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 C12orf76Q8N812 135 aaPredicted RBP13.06□□□□□ -0.32
VPS54-203ENST00000409558 KLHL23Q8NBE8 558 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 KREMEN2Q8NCW0 462 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 IL21Q9HBE4 155 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 IFT80Q9P2H3 777 aaPredicted RBP13.06□□□□□ -0.32
VPS54-203ENST00000409558 PLAGL1Q9UM63 463 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 PCDHB1Q9Y5F3 818 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 TRAV19A0A0A6YYK7 116 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 ELOVL7A1L3X0 281 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 LEFTY1O75610 366 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 ABLIM3O94929 683 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 KRT6AP02538 564 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 KRT6BP04259 564 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 ASLP04424 464 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 PIGAP37287 484 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 KRT6CP48668 564 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 ATP4BP51164 291 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 PHC1P78364 1004 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 ANKDD1AQ495B1 522 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 INO80DQ53TQ3 878 aaPredicted RBP13.06□□□□□ -0.32
VPS54-203ENST00000409558 NEK5Q6P3R8 708 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 ABRAXAS1Q6UWZ7 409 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 ANKFN1Q8N957 763 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms