RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 EIF2S3P41091 472 aaKnown RBP21.04■□□□□ 0.96
CLN3-207ENST00000395653 GPX6P59796 221 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 ILF2Q12905 390 aaKnown RBP21.04■□□□□ 0.96
CLN3-207ENST00000395653 LRRC8EQ6NSJ5 796 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 FAM45BPQ6NSW5 357 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 STRA8Q7Z7C7 330 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 FAM45AQ8TCE6 357 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 TEFMQ96QE5 360 aaKnown RBP21.04■□□□□ 0.96
CLN3-207ENST00000395653 PITPNM3Q9BZ71 974 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 L2HGDHQ9H9P8 463 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 SMYD2Q9NRG4 433 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 ACTR10Q9NZ32 417 aa21.04■□□□□ 0.96
CLN3-207ENST00000395653 TSR3Q9UJK0 312 aaKnown RBP21.04■□□□□ 0.96
CLN3-207ENST00000395653 CELSR3Q9NYQ7 3312 aa21.03■□□□□ 0.96
CLN3-207ENST00000395653 ZBTB11O95625 1053 aaPredicted RBP21.03■□□□□ 0.96
CLN3-207ENST00000395653 CD82P27701 267 aa21.03■□□□□ 0.96
CLN3-207ENST00000395653 BDKRB1P46663 353 aa21.03■□□□□ 0.96
CLN3-207ENST00000395653 CDKN2DP55273 166 aa21.03■□□□□ 0.96
CLN3-207ENST00000395653 DCAF12Q5T6F0 453 aa21.03■□□□□ 0.96
CLN3-207ENST00000395653 HECTD2Q5U5R9 776 aa21.03■□□□□ 0.96
CLN3-207ENST00000395653 ZC3HC1Q86WB0 502 aaKnown RBP21.03■□□□□ 0.96
CLN3-207ENST00000395653 CPNE9Q8IYJ1 553 aa21.03■□□□□ 0.96
CLN3-207ENST00000395653 GPATCH11Q8N954 259 aa21.03■□□□□ 0.96
CLN3-207ENST00000395653 PMEPA1Q969W9 287 aa21.03■□□□□ 0.96
CLN3-207ENST00000395653 TSPYL1Q9H0U9 437 aa21.03■□□□□ 0.96
CLN3-207ENST00000395653 LRRC4CQ9HCJ2 640 aa21.03■□□□□ 0.96
CLN3-207ENST00000395653 FOXJ2Q9P0K8 574 aa21.03■□□□□ 0.96
CLN3-207ENST00000395653 SLC39A10Q9ULF5 831 aa21.03■□□□□ 0.96
CLN3-207ENST00000395653 VWA7Q9Y334 891 aa21.03■□□□□ 0.96
CLN3-207ENST00000395653 A0A087WV48 116 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 FAM159BA6NKW6 160 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 RRP8O43159 456 aaKnown RBP21.02■□□□□ 0.96
CLN3-207ENST00000395653 C1QAP02745 245 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 CATP04040 527 aaKnown RBP21.02■□□□□ 0.96
CLN3-207ENST00000395653 CDH3P22223 829 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 FDXRP22570 491 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 MCM3P25205 808 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 RGS4P49798 205 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 HSD11B2P80365 405 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 ANKS6Q68DC2 871 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 CYB5D1Q6P9G0 228 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 SPESP1Q6UW49 350 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 CEACAM20Q6UY09 585 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 RAB42Q8N4Z0 105 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 LINC01555Q8NAE3 123 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 FBXO15Q8NCQ5 510 aaPredicted RBP21.02■□□□□ 0.96
CLN3-207ENST00000395653 OR2L8Q8NGY9 312 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 IFT81Q8WYA0 676 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 PPM1MQ96MI6 270 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 ZPBPQ9BS86 351 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 MCMBPQ9BTE3 642 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 RHOJQ9H4E5 214 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 BTRCQ9Y297 605 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 PCDHB11Q9Y5F2 797 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 B3GALT1Q9Y5Z6 326 aa21.02■□□□□ 0.96
CLN3-207ENST00000395653 ARHGEF33A8MVX0 844 aa21.01■□□□□ 0.95
CLN3-207ENST00000395653 POLR1CO15160 346 aaPredicted RBP21.01■□□□□ 0.95
CLN3-207ENST00000395653 STX2P32856 288 aa21.01■□□□□ 0.95
CLN3-207ENST00000395653 ARL4DP49703 201 aa21.01■□□□□ 0.95
CLN3-207ENST00000395653 SH3BP2P78314 561 aa21.01■□□□□ 0.95
CLN3-207ENST00000395653 KIR2DS3Q14952 304 aa21.01■□□□□ 0.95
CLN3-207ENST00000395653 CCSMST1Q4G0I0 132 aa21.01■□□□□ 0.95
CLN3-207ENST00000395653 EEF1AKMT2Q5JPI9 291 aaKnown RBP21.01■□□□□ 0.95
CLN3-207ENST00000395653 CYHR1Q6ZMK1 362 aa21.01■□□□□ 0.95
CLN3-207ENST00000395653 RELL1Q8IUW5 271 aa21.01■□□□□ 0.95
CLN3-207ENST00000395653 RASGRP3Q8IV61 690 aa21.01■□□□□ 0.95
CLN3-207ENST00000395653 D2HGDHQ8N465 521 aa21.01■□□□□ 0.95
CLN3-207ENST00000395653 HMGCLL1Q8TB92 370 aa21.01■□□□□ 0.95
CLN3-207ENST00000395653 KCNE4Q8WWG9 221 aa21.01■□□□□ 0.95
CLN3-207ENST00000395653 ASB11Q8WXH4 323 aa21.01■□□□□ 0.95
CLN3-207ENST00000395653 FMO2Q99518 471 aa21.01■□□□□ 0.95
CLN3-207ENST00000395653 APMAPQ9HDC9 416 aa21.01■□□□□ 0.95
CLN3-207ENST00000395653 SPHK1Q9NYA1 384 aa21.01■□□□□ 0.95
CLN3-207ENST00000395653 SPATA7Q9P0W8 599 aa21.01■□□□□ 0.95
CLN3-207ENST00000395653 CIDEBQ9UHD4 219 aa21.01■□□□□ 0.95
CLN3-207ENST00000395653 ADAMTS20P59510 1910 aa21.01■□□□□ 0.95
CLN3-207ENST00000395653 ZZEF1O43149 2961 aa21.01■□□□□ 0.95
CLN3-207ENST00000395653 CXorf49A8MYA2 514 aaPredicted RBP21■□□□□ 0.95
CLN3-207ENST00000395653 IQCJ-SCHIP1C9J366 451 aaPredicted RBP21■□□□□ 0.95
CLN3-207ENST00000395653 GFYI3L273 518 aa21■□□□□ 0.95
CLN3-207ENST00000395653 ZNF500O60304 480 aaPredicted RBP21■□□□□ 0.95
CLN3-207ENST00000395653 UGT2B7P16662 529 aa21■□□□□ 0.95
CLN3-207ENST00000395653 ECHS1P30084 290 aa21■□□□□ 0.95
CLN3-207ENST00000395653 PEBP1P30086 187 aaKnown RBP21■□□□□ 0.95
CLN3-207ENST00000395653 ACY1Q03154 408 aa21■□□□□ 0.95
CLN3-207ENST00000395653 FOXM1Q08050 763 aa21■□□□□ 0.95
CLN3-207ENST00000395653 PDAP1Q13442 181 aaKnown RBP21■□□□□ 0.95
CLN3-207ENST00000395653 IL11RAQ14626 422 aa21■□□□□ 0.95
CLN3-207ENST00000395653 PAQR3Q6TCH7 311 aa21■□□□□ 0.95
CLN3-207ENST00000395653 PIWIL4Q7Z3Z4 852 aaKnown RBP21■□□□□ 0.95
CLN3-207ENST00000395653 FLVCR1-AS1Q8TAF5 88 aa21■□□□□ 0.95
CLN3-207ENST00000395653 SLC22A18Q96BI1 424 aa21■□□□□ 0.95
CLN3-207ENST00000395653 DCBLD2Q96PD2 775 aa21■□□□□ 0.95
CLN3-207ENST00000395653 IL17FQ96PD4 163 aa21■□□□□ 0.95
CLN3-207ENST00000395653 OR2A14Q96R47 310 aa21■□□□□ 0.95
CLN3-207ENST00000395653 OR6C1Q96RD1 312 aa21■□□□□ 0.95
CLN3-207ENST00000395653 OLFM1Q99784 485 aa21■□□□□ 0.95
CLN3-207ENST00000395653 CPNE1Q99829 537 aa21■□□□□ 0.95
CLN3-207ENST00000395653 CTRCQ99895 268 aa21■□□□□ 0.95
CLN3-207ENST00000395653 DPH1Q9BZG8 443 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms