RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 OR52E6Q96RD3 313 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 MYOCQ99972 504 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 MOSPD1Q9UJG1 213 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 DHRS12A0PJE2 317 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 FAM234BA2RU67 622 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 AGAP14A8MT82 685 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 ARPC2O15144 300 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 DFNA5O60443 496 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 NFATC1O95644 943 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 FTH1P02794 183 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 PFKLP17858 780 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 IL10P22301 178 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 TACR1P25103 407 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 SOX9P48436 509 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 PLOD1Q02809 727 aaPredicted RBP10.86□□□□□ -0.67
TCOF1-203ENST00000394269 TLR1Q15399 786 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 ADNP2Q6IQ32 1131 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 GCNT7Q6ZNI0 430 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 ADGRG6Q86SQ4 1221 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 PHACTR4Q8IZ21 702 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 OR8D1Q8WZ84 308 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 RNF145Q96MT1 663 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 ZSCAN5AQ9BUG6 496 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 SLC12A9Q9BXP2 914 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 ACPTQ9BZG2 426 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 ACTL8Q9H568 366 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 SLC24A3Q9HC58 644 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 RIMS3Q9UJD0 308 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 DLGAP4Q9Y2H0 992 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 YBX2Q9Y2T7 364 aaKnown RBP10.86□□□□□ -0.67
TCOF1-203ENST00000394269 PPIL1Q9Y3C6 166 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 RWDD3Q9Y3V2 267 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 AP4B1Q9Y6B7 739 aa10.86□□□□□ -0.67
TCOF1-203ENST00000394269 EP300Q09472 2414 aaPredicted RBP10.85□□□□□ -0.67
TCOF1-203ENST00000394269 RIF1Q5UIP0 2472 aaKnown RBP10.85□□□□□ -0.67
TCOF1-203ENST00000394269 GSTA4O15217 222 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 ATG13O75143 517 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 GMNNO75496 209 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 SLC16A8O95907 504 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 EBLN1P0CF75 366 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 PSMA4P25789 261 aaKnown RBP10.85□□□□□ -0.67
TCOF1-203ENST00000394269 OR4D2P58180 307 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 UBE3AQ05086 875 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 SUSD1Q6UWL2 747 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 OR10A6Q8NH74 314 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 ARRDC3Q96B67 414 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 SLCO4A1Q96BD0 722 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 ASB16Q96NS5 453 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 SLC29A1Q99808 456 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 PBX4Q9BYU1 374 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 CNOT6Q9ULM6 557 aaKnown RBP10.85□□□□□ -0.67
TCOF1-203ENST00000394269 MYO15AQ9UKN7 3530 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 URB1O60287 2271 aaKnown RBP10.85□□□□□ -0.67
TCOF1-203ENST00000394269 ARHGEF33A8MVX0 844 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 H3BM21 787 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 IFRD1O00458 451 aaPredicted RBP10.85□□□□□ -0.67
TCOF1-203ENST00000394269 SEC24DO94855 1032 aaPredicted RBP10.85□□□□□ -0.67
TCOF1-203ENST00000394269 PGM3O95394 542 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 GBAP04062 536 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 PRNPP04156 253 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 PRR35P0CG20 571 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 MEF2AQ02078 507 aaPredicted RBP10.85□□□□□ -0.67
TCOF1-203ENST00000394269 FOXD4Q12950 439 aaPredicted RBP10.85□□□□□ -0.67
TCOF1-203ENST00000394269 OGFRL1Q5TC84 451 aaPredicted RBP10.85□□□□□ -0.67
TCOF1-203ENST00000394269 ZDHHC20Q5W0Z9 365 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 ANKRD26P1Q6NSI1 321 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 MINDY1Q8N5J2 469 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 PHC3Q8NDX5 983 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 VN1R2Q8NFZ6 395 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 NCLNQ969V3 563 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 TMEM125Q96AQ2 219 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 CHFRQ96EP1 664 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 APIPQ96GX9 242 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 FOPNLQ96NB1 174 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 NRTNQ99748 197 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 SLC2A11Q9BYW1 496 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 DNAJC11Q9NVH1 559 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 C1orf109Q9NX04 203 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 TDRKHQ9Y2W6 561 aaKnown RBP10.85□□□□□ -0.67
TCOF1-203ENST00000394269 PLXNA4Q9HCM2 1894 aa10.85□□□□□ -0.67
TCOF1-203ENST00000394269 SAP18O00422 153 aaKnown RBP10.84□□□□□ -0.67
TCOF1-203ENST00000394269 SMNDC1O75940 238 aaKnown RBP eCLIP10.84□□□□□ -0.67
TCOF1-203ENST00000394269 C8GP07360 202 aa10.84□□□□□ -0.67
TCOF1-203ENST00000394269 BCKDHAP12694 445 aa10.84□□□□□ -0.67
TCOF1-203ENST00000394269 VARSP26640 1264 aaKnown RBP10.84□□□□□ -0.67
TCOF1-203ENST00000394269 MMP12P39900 470 aa10.84□□□□□ -0.67
TCOF1-203ENST00000394269 PTPN5P54829 565 aa10.84□□□□□ -0.67
TCOF1-203ENST00000394269 CDKL1Q00532 357 aa10.84□□□□□ -0.67
TCOF1-203ENST00000394269 PPP1R8Q12972 351 aaKnown RBP10.84□□□□□ -0.67
TCOF1-203ENST00000394269 INPP5AQ14642 412 aa10.84□□□□□ -0.67
TCOF1-203ENST00000394269 HENMT1Q5T8I9 393 aaKnown RBP10.84□□□□□ -0.67
TCOF1-203ENST00000394269 CYP2U1Q7Z449 544 aa10.84□□□□□ -0.67
TCOF1-203ENST00000394269 ZFAND4Q86XD8 727 aa10.84□□□□□ -0.67
TCOF1-203ENST00000394269 TRAM1L1Q8N609 369 aa10.84□□□□□ -0.67
TCOF1-203ENST00000394269 STON2Q8WXE9 905 aa10.84□□□□□ -0.67
TCOF1-203ENST00000394269 GBP5Q96PP8 586 aa10.84□□□□□ -0.67
TCOF1-203ENST00000394269 GPATCH1Q9BRR8 931 aaKnown RBP10.84□□□□□ -0.67
TCOF1-203ENST00000394269 ZIM2Q9NZV7 527 aa10.84□□□□□ -0.67
TCOF1-203ENST00000394269 VAPAQ9P0L0 249 aa10.84□□□□□ -0.67
TCOF1-203ENST00000394269 PLAGL1Q9UM63 463 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms