RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 ZNF707Q96C28 371 aaPredicted RBP10.91□□□□□ -0.66
CUX1-204ENST00000393824 L3HYPDHQ96EM0 354 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 TRMT2BQ96GJ1 504 aaKnown RBP10.91□□□□□ -0.66
CUX1-204ENST00000393824 AGAP4Q96P64 663 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 TBL1YQ9BQ87 522 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 PRKD2Q9BZL6 878 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 TRIM8Q9BZR9 551 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 MMP27Q9H306 513 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 CCDC177Q9NQR7 707 aaPredicted RBP10.91□□□□□ -0.66
CUX1-204ENST00000393824 ZMAT5Q9UDW3 170 aaKnown RBP10.91□□□□□ -0.66
CUX1-204ENST00000393824 FBXO5Q9UKT4 447 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 INTS6Q9UL03 887 aaKnown RBP10.91□□□□□ -0.66
CUX1-204ENST00000393824 DNAJC15Q9Y5T4 150 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 MAGED1Q9Y5V3 778 aaPredicted RBP10.91□□□□□ -0.66
CUX1-204ENST00000393824 SLC12A8A0AV02 714 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 PTGES3LE9PB15 166 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 G3V2T6 193 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 MOSPD3O75425 235 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 SUPT7LO94864 414 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 LRIG2O94898 1065 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 GLP2RO95838 553 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 F9P00740 461 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 LRG1P02750 347 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 LTA4HP09960 611 aaKnown RBP10.91□□□□□ -0.66
CUX1-204ENST00000393824 CD6P30203 668 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 PIGAP37287 484 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 MRPL19P49406 292 aaKnown RBP10.91□□□□□ -0.66
CUX1-204ENST00000393824 CREMQ03060 361 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 GRIK2Q13002 908 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 KCNC3Q14003 757 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 VEPH1Q14D04 833 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 TAF12Q16514 161 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 ZNF470Q6ECI4 717 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 ARL14EPQ8N8R7 260 aaPredicted RBP10.91□□□□□ -0.66
CUX1-204ENST00000393824 ADAMTS19Q8TE59 1207 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 RNF34Q969K3 372 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 LGALS12Q96DT0 336 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 NSMCE2Q96MF7 247 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 FCRL5Q96RD9 977 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 APOL2Q9BQE5 337 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 C2orf49Q9BVC5 232 aaPredicted RBP10.91□□□□□ -0.66
CUX1-204ENST00000393824 ANAPC1Q9H1A4 1944 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 TTYH1Q9H313 450 aaPredicted RBP10.91□□□□□ -0.66
CUX1-204ENST00000393824 IGFLR1Q9H665 355 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 NDFIP2Q9NV92 336 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 OR12D3Q9UGF7 316 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 ZNF221Q9UK13 617 aa10.91□□□□□ -0.66
CUX1-204ENST00000393824 TBX1O43435 398 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 IGLV3-27P01718 113 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 SPNP16150 400 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 RGS19P49795 217 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 CLCN5P51795 746 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 NCS1P62166 190 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 LSM3P62310 102 aaKnown RBP10.9□□□□□ -0.66
CUX1-204ENST00000393824 C19orf57Q0VDD7 668 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 KCNAB2Q13303 367 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 IL18R1Q13478 541 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 CDK10Q15131 360 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 RAB30Q15771 203 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 ZNF678Q5SXM1 525 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 ZNF691Q5VV52 312 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 NADSYN1Q6IA69 706 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 GLYATQ6IB77 296 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 SULT1C3Q6IMI6 304 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 CCBE1Q6UXH8 406 aaPredicted RBP10.9□□□□□ -0.66
CUX1-204ENST00000393824 NPWQ8N729 165 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 MCFD2Q8NI22 146 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 SDCCAG3Q96C92 435 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 PHF21BQ96EK2 531 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 CCDC90BQ9GZT6 254 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 TREX1Q9NSU2 369 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 MAGEL2Q9UJ55 1249 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 MOSPD1Q9UJG1 213 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 COLQQ9Y215 455 aaPredicted RBP10.9□□□□□ -0.66
CUX1-204ENST00000393824 ARIH1Q9Y4X5 557 aaPredicted RBP10.9□□□□□ -0.66
CUX1-204ENST00000393824 HS3ST4Q9Y661 456 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 A3GALT2U3KPV4 340 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 BPTFQ12830 3046 aa10.9□□□□□ -0.66
CUX1-204ENST00000393824 LOC100130705A0A1B0GUX0 176 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 AGAP5A6NIR3 686 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 SOX1O00570 391 aaPredicted RBP10.9□□□□□ -0.67
CUX1-204ENST00000393824 CDK2AP1O14519 115 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 SLC16A6O15403 523 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 EEDO75530 441 aaKnown RBP10.9□□□□□ -0.67
CUX1-204ENST00000393824 CNTN5O94779 1100 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 NPPAP01160 153 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 JCHAINP01591 159 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 KRT6AP02538 564 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 KRT6BP04259 564 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 IRF1P10914 325 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 LBPP18428 481 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 CCNCP24863 283 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 ARNTP27540 789 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 ALDH4A1P30038 563 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 CCR1P32246 355 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 PLK1P53350 603 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 IST1P53990 364 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 GEMP55040 296 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 P2RX3P56373 397 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 TBX4P57082 545 aa10.9□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms