RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 CHIT1Q13231 466 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 UBAP2LQ14157 1087 aaKnown RBP10.07□□□□□ -0.8
COL6A3-205ENST00000392004 TJAP1Q5JTD0 557 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 RBM44Q6ZP01 1051 aaKnown RBP10.07□□□□□ -0.8
COL6A3-205ENST00000392004 LRIG1Q96JA1 1093 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 LRGUKQ96M69 825 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 GSDMCQ9BYG8 508 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 WDR55Q9H6Y2 383 aaPredicted RBP10.07□□□□□ -0.8
COL6A3-205ENST00000392004 TRPC4Q9UBN4 977 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 FTSJ1Q9UET6 329 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 PADI4Q9UM07 663 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 BCAT2O15382 392 aaPredicted RBP10.07□□□□□ -0.8
COL6A3-205ENST00000392004 CD38P28907 300 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 AQP4P55087 323 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 SMAD2Q15796 467 aaKnown RBP10.07□□□□□ -0.8
COL6A3-205ENST00000392004 SFT2D3Q587I9 215 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 C9orf64Q5T6V5 341 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 LYPLAL1Q5VWZ2 237 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 CAPN13Q6MZZ7 669 aaPredicted RBP10.07□□□□□ -0.8
COL6A3-205ENST00000392004 EID2Q8N6I1 236 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 PATE1Q8WXA2 126 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 THUMPD3Q9BV44 507 aaKnown RBP10.07□□□□□ -0.8
COL6A3-205ENST00000392004 MBNL1Q9NR56 388 aaKnown RBP10.07□□□□□ -0.8
COL6A3-205ENST00000392004 DDX18Q9NVP1 670 aaKnown RBP10.07□□□□□ -0.8
COL6A3-205ENST00000392004 IL17CQ9P0M4 197 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 NR5A2O00482 541 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 ZMPSTE24O75844 475 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 IGLV3-25P01717 112 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 TCEA1P23193 301 aaKnown RBP10.07□□□□□ -0.8
COL6A3-205ENST00000392004 MYBPC3Q14896 1274 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 WSCD2Q2TBF2 565 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 ZDHHC20Q5W0Z9 365 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 FAM92BQ6ZTR7 304 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 ZC3HC1Q86WB0 502 aaKnown RBP10.07□□□□□ -0.8
COL6A3-205ENST00000392004 ZNF276Q8N554 614 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 OR13H1Q8NG92 308 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 EDAQ92838 391 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 RAB7BQ96AH8 199 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 APOLD1Q96LR9 279 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 CCM2Q9BSQ5 444 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 DHRS4Q9BTZ2 278 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 OCEL1Q9H607 264 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 RIC8BQ9NVN3 520 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 STOX2Q9P2F5 926 aaPredicted RBP10.07□□□□□ -0.8
COL6A3-205ENST00000392004 GALPQ9UBC7 116 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 BCAP29Q9UHQ4 241 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 MMP17Q9ULZ9 603 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 FAF1Q9UNN5 650 aaPredicted RBP10.07□□□□□ -0.8
COL6A3-205ENST00000392004 TRPM6Q9BX84 2022 aa10.07□□□□□ -0.8
COL6A3-205ENST00000392004 C15orf38-AP3S2A0A0A6YYH1 394 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 LRRC14BA6NHZ5 514 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 ATP6V1B1P15313 513 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 LHCGRP22888 699 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 ATP5F1P24539 256 aaPredicted RBP10.06□□□□□ -0.8
COL6A3-205ENST00000392004 PEX2P28328 305 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 ETV4P43268 484 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 CCR10P46092 362 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 RAB8AP61006 207 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 FOLH1Q04609 750 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 VWA5B1Q5TIE3 1220 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 KDELC1Q6UW63 502 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 Q6ZNB5 142 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 ARPINQ7Z6K5 226 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 RBM12BQ8IXT5 1001 aaKnown RBP10.06□□□□□ -0.8
COL6A3-205ENST00000392004 BIRC7Q96CA5 298 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 CMTM5Q96DZ9 223 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 APOOQ9BUR5 198 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 CPEB1Q9BZB8 566 aaKnown RBP10.06□□□□□ -0.8
COL6A3-205ENST00000392004 C1orf21Q9H246 121 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 SGK2Q9HBY8 427 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 EIF2B3Q9NR50 452 aaKnown RBP10.06□□□□□ -0.8
COL6A3-205ENST00000392004 PNPOQ9NVS9 261 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 IL37Q9NZH6 218 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 PLLPQ9Y342 182 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 CAPN14A8MX76 684 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 H7BY64 318 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 GMFGO60234 142 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 CDC123O75794 336 aaPredicted RBP10.06□□□□□ -0.8
COL6A3-205ENST00000392004 SSR2P43308 183 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 FBXW4P57775 412 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 RPS14P62263 151 aaKnown RBP10.06□□□□□ -0.8
COL6A3-205ENST00000392004 RPL38P63173 70 aaKnown RBP10.06□□□□□ -0.8
COL6A3-205ENST00000392004 NRG1Q02297 640 aaPredicted RBP10.06□□□□□ -0.8
COL6A3-205ENST00000392004 AGKQ53H12 422 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 KLHL35Q6PF15 583 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 PLD6Q8N2A8 252 aaKnown RBP10.06□□□□□ -0.8
COL6A3-205ENST00000392004 BTN2A2Q8WVV5 523 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 GLMNQ92990 594 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 GUCD1Q96NT3 240 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 PRAP1Q96NZ9 151 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 LRRC3Q9BY71 257 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 ARRDC1-AS1Q9H2J1 176 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 CCDC177Q9NQR7 707 aaPredicted RBP10.06□□□□□ -0.8
COL6A3-205ENST00000392004 A0A087X1B8 175 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 GNGT2O14610 69 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 OR4F21O95013 312 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 TGFB1P01137 390 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 DDX5P17844 614 aaKnown RBP10.06□□□□□ -0.8
COL6A3-205ENST00000392004 PDHA2P29803 388 aa10.06□□□□□ -0.8
COL6A3-205ENST00000392004 AGTR2P50052 363 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms