RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 FBXL8Q96CD0 374 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 MTFMTQ96DP5 389 aaKnown RBP8.6□□□□□ -1.03
LIG3-202ENST00000378526 ASB9Q96DX5 294 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 COL21A1Q96P44 957 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 THUMPD1Q9NXG2 353 aaKnown RBP8.6□□□□□ -1.03
LIG3-202ENST00000378526 CHD5Q8TDI0 1954 aa8.6□□□□□ -1.03
LIG3-202ENST00000378526 ADGRF5Q8IZF2 1346 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 LOC100130705A0A1B0GUX0 176 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 OR6C74A6NCV1 312 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 BTNL10A8MVZ5 291 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 STAG3L2P0CL84 134 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 GSTM3P21266 225 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 PRKAG1P54619 331 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 KLF10Q13118 480 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 SWSAP1Q6NVH7 229 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 P4HA3Q7Z4N8 544 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 ZNF410Q86VK4 478 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 SCUBE3Q8IX30 993 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 ZNF563Q8TA94 476 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 MRPS31Q92665 395 aaKnown RBP8.59□□□□□ -1.03
LIG3-202ENST00000378526 RAB39BQ96DA2 213 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 CGREF1Q99674 301 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 QRSL1Q9H0R6 528 aaKnown RBP8.59□□□□□ -1.03
LIG3-202ENST00000378526 IFT22Q9H7X7 185 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 MEN1O00255 615 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 REP15Q6BDI9 236 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 FAM136AQ96C01 138 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 INPP4AQ96PE3 977 aaPredicted RBP8.59□□□□□ -1.03
LIG3-202ENST00000378526 ACSS3Q9H6R3 686 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 NEUROD4Q9HD90 331 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 FAM96BQ9Y3D0 163 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 GRIN2DO15399 1336 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 PRRG1O14668 218 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 PPP1R2P9O14990 202 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 GJB6O95452 261 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 ACOT2P49753 483 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 RAB31Q13636 194 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 DPYSL3Q14195 570 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 GINS1Q14691 196 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 ALX1Q15699 326 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 PAN3Q58A45 887 aaKnown RBP8.59□□□□□ -1.03
LIG3-202ENST00000378526 PIGGQ5H8A4 983 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 COQ5Q5HYK3 327 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 SH3PXD2AQ5TCZ1 1133 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 CCBE1Q6UXH8 406 aaPredicted RBP8.59□□□□□ -1.03
LIG3-202ENST00000378526 ART4Q93070 314 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 ATG5Q9H1Y0 275 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 PLCXD1Q9NUJ7 323 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 DNPEPQ9ULA0 475 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 HEATR1Q9H583 2144 aaKnown RBP8.59□□□□□ -1.03
LIG3-202ENST00000378526 ASXL2Q76L83 1435 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 ARHGEF40Q8TER5 1519 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 ZNF701M0R085 212 aaPredicted RBP8.59□□□□□ -1.03
LIG3-202ENST00000378526 SC5DO75845 299 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 CCND3P30281 292 aaPredicted RBP8.59□□□□□ -1.03
LIG3-202ENST00000378526 ZNF169Q14929 603 aaPredicted RBP8.59□□□□□ -1.03
LIG3-202ENST00000378526 RNF212Q495C1 297 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 HIST2H3PS2Q5TEC6 136 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 HDAC10Q969S8 669 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 NUDT16L1Q9BRJ7 211 aaKnown RBP8.59□□□□□ -1.03
LIG3-202ENST00000378526 PTPRHQ9HD43 1115 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 NPAP1Q9NZP6 1156 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 TFR2Q9UP52 801 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 HMX3A6NHT5 357 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 TLR5O60602 858 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 RENP00797 406 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 SHBGP04278 402 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 ZNF823P16415 610 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 ENDOUP21128 410 aaKnown RBP8.59□□□□□ -1.03
LIG3-202ENST00000378526 PBLDP30039 288 aaPredicted RBP8.59□□□□□ -1.03
LIG3-202ENST00000378526 SMSP52788 366 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 EEF1A1P68104 462 aaKnown RBP8.59□□□□□ -1.03
LIG3-202ENST00000378526 EEF1A1P5Q5VTE0 462 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 ADIPOR2Q86V24 386 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 ZDHHC21Q8IVQ6 265 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 UEVLDQ8IX04 471 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 RERGQ96A58 199 aaPredicted RBP8.59□□□□□ -1.03
LIG3-202ENST00000378526 LRCH3Q96II8 777 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 MAF1Q9H063 256 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 PCDHAC1Q9H158 963 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 REV1Q9UBZ9 1251 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 POMPQ9Y244 141 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 CPDO75976 1380 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 CHD4Q14839 1912 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 RAB3DO95716 219 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 OR8U9P0C7N5 309 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 PRR5P85299 388 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 RHDQ02161 417 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 IRF8Q02556 426 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 SF1Q15637 639 aaKnown RBP8.59□□□□□ -1.03
LIG3-202ENST00000378526 ECHDC2Q86YB7 292 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 SUN3Q8TAQ9 357 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 NIT2Q9NQR4 276 aa8.59□□□□□ -1.03
LIG3-202ENST00000378526 URB2Q14146 1524 aaKnown RBP8.59□□□□□ -1.03
LIG3-202ENST00000378526 H3BSA7 217 aa8.59□□□□□ -1.04
LIG3-202ENST00000378526 KERAO60938 352 aa8.59□□□□□ -1.04
LIG3-202ENST00000378526 PEX11AO75192 247 aa8.59□□□□□ -1.04
LIG3-202ENST00000378526 SFTPBP07988 381 aa8.59□□□□□ -1.04
LIG3-202ENST00000378526 RPS17P08708 135 aaKnown RBP8.59□□□□□ -1.04
LIG3-202ENST00000378526 CKBP12277 381 aa8.59□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms