RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 SPANXN2Q5MJ10 180 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 ANO7Q6IWH7 933 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 SUSD1Q6UWL2 747 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 OR52B6Q8NGF0 335 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 SLC9A6Q92581 669 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 TOR4AQ9NXH8 423 aa12.92□□□□□ -0.34
NPHP4-203ENST00000378169 NDRG2Q9UN36 371 aaKnown RBP12.92□□□□□ -0.34
NPHP4-203ENST00000378169 BCKDKO14874 412 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 ADAM12O43184 909 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 LEFTY1O75610 366 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 OPN1SWP03999 348 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 PGRP06401 933 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 RHOP08100 348 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 KELP23276 732 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 GDI1P31150 447 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 MTTPP55157 894 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 IRF5Q13568 498 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 SFT2D3Q587I9 215 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 C6orf136Q5SQH8 315 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 PDE12Q6L8Q7 609 aaKnown RBP12.91□□□□□ -0.34
NPHP4-203ENST00000378169 ALKAL1Q6UXT8 129 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 FAM129CQ86XR2 697 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 PIK3C3Q8NEB9 887 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 LCN9Q8WX39 176 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 NUS1Q96E22 293 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 RNFT2Q96EX2 444 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 AURKBQ96GD4 344 aaPredicted RBP12.91□□□□□ -0.34
NPHP4-203ENST00000378169 DPEP2Q9H4A9 486 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 COQ6Q9Y2Z9 468 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 DHRS7Q9Y394 339 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 AP3D1O14617 1153 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 ANGPTL1O95841 491 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 FADS2O95864 444 aaKnown RBP12.91□□□□□ -0.34
NPHP4-203ENST00000378169 VIPP01282 170 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 FYNP06241 537 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 CDH12P55289 794 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 CDH15P55291 814 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 RHDQ02161 417 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 TOP3AQ13472 1001 aaPredicted RBP12.91□□□□□ -0.34
NPHP4-203ENST00000378169 PDGFRLQ15198 375 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 ARMC4Q5T2S8 1044 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 ZNF648Q5T619 568 aaPredicted RBP12.91□□□□□ -0.34
NPHP4-203ENST00000378169 ERICH5Q6P6B1 374 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 AHI1Q8N157 1196 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 RBM4BQ9BQ04 359 aaKnown RBP12.91□□□□□ -0.34
NPHP4-203ENST00000378169 RBM4Q9BWF3 364 aaKnown RBP12.91□□□□□ -0.34
NPHP4-203ENST00000378169 TRIT1Q9H3H1 467 aaKnown RBP12.91□□□□□ -0.34
NPHP4-203ENST00000378169 ATP6V1HQ9UI12 483 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 TNFRSF11BO00300 401 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 GPR39O43194 453 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 TPST2O60704 377 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 FABP3P05413 133 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 DHRS4L1P0CG22 281 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 ETV3P41162 512 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 CLCNKAP51800 687 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 AP1S2P56377 157 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 DNAJB13P59910 316 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 SRSF11Q05519 484 aaKnown RBP12.91□□□□□ -0.34
NPHP4-203ENST00000378169 USP39Q53GS9 565 aaKnown RBP12.91□□□□□ -0.34
NPHP4-203ENST00000378169 AGTRAPQ6RW13 159 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 ZNF655Q8N720 491 aaPredicted RBP12.91□□□□□ -0.34
NPHP4-203ENST00000378169 OR5AK3PQ8NH89 298 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 ZCCHC10Q8TBK6 192 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 BPIFB1Q8TDL5 484 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 ADAMTS15Q8TE58 950 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 ZHX1-C8orf76Q96EF9 292 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 ZSCAN5AQ9BUG6 496 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 SPATA5L1Q9BVQ7 753 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 REXO4Q9GZR2 422 aaKnown RBP12.91□□□□□ -0.34
NPHP4-203ENST00000378169 MUC13Q9H3R2 512 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 CLN6Q9NWW5 311 aa12.91□□□□□ -0.34
NPHP4-203ENST00000378169 AQP12BA6NM10 295 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 CLIC1O00299 241 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 ARHGEF9O43307 516 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 T-ENOLP0DO92 83 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 UGT2B15P54855 530 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 SNAP47Q5SQN1 464 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 GCNT6Q5T4J0 391 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 AHSA2Q719I0 299 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 ISCA2Q86U28 154 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 HEATR4Q86WZ0 1026 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 AQP12AQ8IXF9 295 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 NHSQ6T4R5 1651 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 MAST2Q6P0Q8 1798 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 CCDC85CA6NKD9 419 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 G3V2L1 256 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 PITPNM1O00562 1244 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 NDUFS2O75306 463 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 SNNO75324 88 aaPredicted RBP12.9□□□□□ -0.34
NPHP4-203ENST00000378169 DIRAS1O95057 198 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 CLIC3O95833 236 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 SKP1P63208 163 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 NTHL1P78549 312 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 OR4D1Q15615 310 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 PPP2R2DQ66LE6 453 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 TSPAN33Q86UF1 283 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 DEPDC4Q8N2C3 294 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 FAM110BQ8TC76 370 aa12.9□□□□□ -0.34
NPHP4-203ENST00000378169 GTPBP3Q969Y2 492 aaKnown RBP12.9□□□□□ -0.34
NPHP4-203ENST00000378169 RSPH9Q9H1X1 276 aaPredicted RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms