RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 ARHGEF33A8MVX0 844 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 C2orf74A8MZ97 194 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 PSIP1O75475 530 aaKnown RBP12.94□□□□□ -0.34
VPS28-202ENST00000377348 CHRM5P08912 532 aaPredicted RBP12.94□□□□□ -0.34
VPS28-202ENST00000377348 GSTA2P09210 222 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 PVRP15151 417 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 NELFEP18615 380 aaKnown RBP12.94□□□□□ -0.34
VPS28-202ENST00000377348 SAT1P21673 171 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 CDH3P22223 829 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 FDXRP22570 491 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 PRDX3P30048 256 aaKnown RBP12.94□□□□□ -0.34
VPS28-202ENST00000377348 RAB28P51157 221 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 MC2RQ01718 297 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 FOXM1Q08050 763 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 EFTUD2Q15029 972 aaKnown RBP eCLIP12.94□□□□□ -0.342e-7■■■■□ 23.3
VPS28-202ENST00000377348 ANKS6Q68DC2 871 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 FAM45BPQ6NSW5 357 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 CYHR1Q6ZMK1 362 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 TRIM73Q86UV7 250 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 SLC26A11Q86WA9 606 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 ZC3HC1Q86WB0 502 aaKnown RBP12.94□□□□□ -0.34
VPS28-202ENST00000377348 SNIP1Q8TAD8 396 aaKnown RBP12.94□□□□□ -0.34
VPS28-202ENST00000377348 FAM45AQ8TCE6 357 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 EEF1AKMT1Q8WVE0 214 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 UBXN4Q92575 508 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 RAD51AP1Q96B01 352 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 ELMO2Q96JJ3 720 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 TAAR9Q96RI9 348 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 CD180Q99467 661 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 FMO2Q99518 471 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 NINJ2Q9NZG7 142 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 SEMA5BQ9P283 1151 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 MTRF1LQ9UGC7 380 aaKnown RBP12.94□□□□□ -0.34
VPS28-202ENST00000377348 SLC39A10Q9ULF5 831 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 VWA7Q9Y334 891 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 PCDHGA7Q9Y5G6 932 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 B3GALT1Q9Y5Z6 326 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 AHCTF1Q8WYP5 2266 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 FAM95CA0A1B0GW59 222 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 SLC9B1P1A6NJY1 282 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 B4E171 279 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 MATN2O00339 956 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 RASGRF2O14827 1237 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 ZNF500O60304 480 aaPredicted RBP12.93□□□□□ -0.34
VPS28-202ENST00000377348 KDM1AO60341 852 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 EBLN1P0CF75 366 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 MPC1LP0DKB6 136 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 ENO3P13929 434 aaPredicted RBP12.93□□□□□ -0.34
VPS28-202ENST00000377348 FOLR1P15328 257 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 ST6GAL1P15907 406 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 UGT2B7P16662 529 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 CCNFP41002 786 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 EIF2S3P41091 472 aaKnown RBP12.93□□□□□ -0.34
VPS28-202ENST00000377348 TSPAN7P41732 249 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 MLLT3P42568 568 aaPredicted RBP12.93□□□□□ -0.34
VPS28-202ENST00000377348 PCBP4P57723 403 aaKnown RBP12.93□□□□□ -0.34
VPS28-202ENST00000377348 PDAP1Q13442 181 aaKnown RBP12.93□□□□□ -0.34
VPS28-202ENST00000377348 ZNF460Q14592 562 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 KBTBD12Q3ZCT8 623 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 UGT3A1Q6NUS8 523 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 TTC23LQ6PF05 361 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 SPESP1Q6UW49 350 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 NEK10Q6ZWH5 1172 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 ZFAND4Q86XD8 727 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 CTAGE3PQ8IX95 158 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 FAM20CQ8IXL6 584 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 FLVCR1-AS1Q8TAF5 88 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 DENND1AQ8TEH3 1009 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 CDKL2Q92772 493 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 LINGO1Q96FE5 620 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 VPS39Q96JC1 886 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 SLC41A2Q96JW4 573 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 OR2A14Q96R47 310 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 OR6C1Q96RD1 312 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 MCMBPQ9BTE3 642 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 RHOJQ9H4E5 214 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 SOHLH2Q9NX45 425 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 NSMCE4AQ9NXX6 385 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 OR6C2Q9NZP2 312 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 CORO1CQ9ULV4 474 aaPredicted RBP12.93□□□□□ -0.34
VPS28-202ENST00000377348 NFU1Q9UMS0 254 aa12.93□□□□□ -0.34
VPS28-202ENST00000377348 ESPNB1AK53 854 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 ISM1B1AKI9 464 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 POLR1CO15160 346 aaPredicted RBP12.92□□□□□ -0.34
VPS28-202ENST00000377348 NVLO15381 856 aaKnown RBP12.92□□□□□ -0.34
VPS28-202ENST00000377348 FAM155BO75949 473 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 ZBTB11O95625 1053 aaPredicted RBP12.92□□□□□ -0.34
VPS28-202ENST00000377348 TSPAN12O95859 305 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 CATP04040 527 aaKnown RBP12.92□□□□□ -0.34
VPS28-202ENST00000377348 CBSLP0DN79 551 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 CD9P21926 228 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 STX2P32856 288 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 CBSP35520 551 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 SKIV2L2P42285 1042 aaKnown RBP12.92□□□□□ -0.34
VPS28-202ENST00000377348 ARL4DP49703 201 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 TAS2R39P59534 338 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 FASTKQ14296 549 aaKnown RBP12.92□□□□□ -0.34
VPS28-202ENST00000377348 TMEM207Q6UWW9 146 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 CYS1Q717R9 158 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 PPM1NQ8N819 430 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms