RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 OR52E4Q8NGH9 312 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 LKAAEAR1Q8TD35 194 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 FUBP3Q96I24 572 aaKnown RBP eCLIP16.03■□□□□ 0.163e-7■■■□□ 14.7
SDC4-201ENST00000372733 EGFL8Q99944 293 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 SH3GL1Q99961 368 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 INPP5KQ9BT40 448 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 P2RY12Q9H244 342 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 LRTM1Q9HBL6 345 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 SCHIP1Q9P0W5 487 aaPredicted RBP16.03■□□□□ 0.16
SDC4-201ENST00000372733 PNMA8BQ9ULN7 279 aaPredicted RBP16.03■□□□□ 0.16
SDC4-201ENST00000372733 DHRS7Q9Y394 339 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 ANGPTL3Q9Y5C1 460 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 PCDHB5Q9Y5E4 795 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 ZFP37Q9Y6Q3 630 aaPredicted RBP16.03■□□□□ 0.16
SDC4-201ENST00000372733 TTC34A8MYJ7 566 aa16.02■□□□□ 0.16
SDC4-201ENST00000372733 M0QX08 132 aa16.02■□□□□ 0.16
SDC4-201ENST00000372733 RAD51BO15315 384 aa16.02■□□□□ 0.16
SDC4-201ENST00000372733 DIRAS1O95057 198 aa16.02■□□□□ 0.16
SDC4-201ENST00000372733 ZNF682O95780 498 aa16.02■□□□□ 0.16
SDC4-201ENST00000372733 PTGER3P43115 390 aa16.02■□□□□ 0.16
SDC4-201ENST00000372733 GBX1Q14549 363 aa16.02■□□□□ 0.16
SDC4-201ENST00000372733 ZC3H12BQ5HYM0 836 aaKnown RBP16.02■□□□□ 0.16
SDC4-201ENST00000372733 CACHD1Q5VU97 1274 aa16.02■□□□□ 0.16
SDC4-201ENST00000372733 USP50Q70EL3 339 aaPredicted RBP16.02■□□□□ 0.16
SDC4-201ENST00000372733 CALHM3Q86XJ0 350 aa16.02■□□□□ 0.16
SDC4-201ENST00000372733 RGL4Q8IZJ4 473 aa16.02■□□□□ 0.16
SDC4-201ENST00000372733 PYURFQ96I23 114 aa16.02■□□□□ 0.16
SDC4-201ENST00000372733 BCL7BQ9BQE9 202 aa16.02■□□□□ 0.16
SDC4-201ENST00000372733 DUSP21Q9H596 190 aa16.02■□□□□ 0.16
SDC4-201ENST00000372733 OLA1Q9NTK5 396 aaKnown RBP16.02■□□□□ 0.16
SDC4-201ENST00000372733 ZNF490Q9ULM2 529 aaPredicted RBP16.02■□□□□ 0.16
SDC4-201ENST00000372733 RBMX2Q9Y388 322 aaKnown RBP16.02■□□□□ 0.16
SDC4-201ENST00000372733 IL6P05231 212 aa16.02■□□□□ 0.15
SDC4-201ENST00000372733 EPHA2P29317 976 aa16.02■□□□□ 0.15
SDC4-201ENST00000372733 PHKG1Q16816 387 aa16.02■□□□□ 0.15
SDC4-201ENST00000372733 SHQ1Q6PI26 577 aaKnown RBP16.02■□□□□ 0.15
SDC4-201ENST00000372733 GALNT10Q86SR1 603 aa16.02■□□□□ 0.15
SDC4-201ENST00000372733 PLPP6Q8IY26 295 aa16.02■□□□□ 0.15
SDC4-201ENST00000372733 SETD9Q8NE22 299 aa16.02■□□□□ 0.15
SDC4-201ENST00000372733 MTFMTQ96DP5 389 aaKnown RBP16.02■□□□□ 0.15
SDC4-201ENST00000372733 MAGEH1Q9H213 219 aa16.02■□□□□ 0.15
SDC4-201ENST00000372733 TLR8Q9NR97 1041 aaKnown RBP16.02■□□□□ 0.15
SDC4-201ENST00000372733 MYO1GB0I1T2 1018 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 ANKRD66B4E2M5 251 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 CBX4O00257 560 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 RECQL5O94762 991 aaPredicted RBP16.01■□□□□ 0.15
SDC4-201ENST00000372733 OAZ2O95190 189 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 SEC24AO95486 1093 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 PRAMEF12O95522 483 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 C1QCP02747 245 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 CD40LGP29965 261 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 GNPDA1P46926 289 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 GZMMP51124 257 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 DAPP51397 102 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 ZNF362Q5T0B9 420 aaPredicted RBP16.01■□□□□ 0.15
SDC4-201ENST00000372733 ATG9BQ674R7 924 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 GLB1L3Q8NCI6 653 aaPredicted RBP16.01■□□□□ 0.15
SDC4-201ENST00000372733 PHF10Q8WUB8 498 aaKnown RBP16.01■□□□□ 0.15
SDC4-201ENST00000372733 CORO1BQ9BR76 489 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 SERHLQ9NQF3 203 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 WWOXQ9NZC7 414 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 TPRKBQ9Y3C4 175 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 TSC22D4Q9Y3Q8 395 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 ARIH1Q9Y4X5 557 aaPredicted RBP16.01■□□□□ 0.15
SDC4-201ENST00000372733 BCKDHAP12694 445 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 JUNDP17535 347 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 CA5AP35218 305 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 CDKN2CP42773 168 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 SLC14A1Q13336 389 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 SYT6Q5T7P8 510 aaPredicted RBP16.01■□□□□ 0.15
SDC4-201ENST00000372733 CAPN13Q6MZZ7 669 aaPredicted RBP16.01■□□□□ 0.15
SDC4-201ENST00000372733 PAGE2Q7Z2X7 111 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 ZNF540Q8NDQ6 660 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 PSMA8Q8TAA3 256 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 PYCR2Q96C36 320 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 SEPT5Q99719 369 aaPredicted RBP16.01■□□□□ 0.15
SDC4-201ENST00000372733 BOCQ9BWV1 1114 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 ASPSCR1Q9BZE9 553 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 CIPCQ9C0C6 399 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 SLIRPQ9GZT3 109 aaKnown RBP16.01■□□□□ 0.15
SDC4-201ENST00000372733 TNKS2Q9H2K2 1166 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 CRISPLD1Q9H336 500 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 IL37Q9NZH6 218 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 OPTCQ9UBM4 332 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 ZNF229Q9UJW7 825 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 DLGAP4Q9Y2H0 992 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 GMPPBQ9Y5P6 360 aa16.01■□□□□ 0.15
SDC4-201ENST00000372733 ULK1O75385 1050 aa16■□□□□ 0.15
SDC4-201ENST00000372733 LCKP06239 509 aa16■□□□□ 0.15
SDC4-201ENST00000372733 OR1G1P47890 313 aa16■□□□□ 0.15
SDC4-201ENST00000372733 ST13P50502 369 aaKnown RBP16■□□□□ 0.15
SDC4-201ENST00000372733 SGSHP51688 502 aa16■□□□□ 0.15
SDC4-201ENST00000372733 FCGRTP55899 365 aa16■□□□□ 0.15
SDC4-201ENST00000372733 HUNKP57058 714 aa16■□□□□ 0.15
SDC4-201ENST00000372733 RING1Q06587 406 aa16■□□□□ 0.15
SDC4-201ENST00000372733 MAD2L1Q13257 205 aaPredicted RBP16■□□□□ 0.15
SDC4-201ENST00000372733 PTRHD1Q6GMV3 140 aaKnown RBP16■□□□□ 0.15
SDC4-201ENST00000372733 LINGO4Q6UY18 593 aa16■□□□□ 0.15
SDC4-201ENST00000372733 MBOAT1Q6ZNC8 495 aa16■□□□□ 0.15
SDC4-201ENST00000372733 LINC00299Q6ZSB3 139 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms