RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 OR14A2Q96R54 314 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 MAGEB17A8MXT2 336 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 WNT7AO00755 349 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 SAGP10523 405 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-203ENST00000353578 CHRNB2P17787 502 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 ESCO2Q56NI9 601 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 SMAP2Q8WU79 429 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-203ENST00000353578 HSFY1Q96LI6 401 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 OR52B2Q96RD2 323 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 YIPF4Q9BSR8 244 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 LHX5Q9H2C1 402 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 PPIEQ9UNP9 301 aaKnown RBP12.39□□□□□ -0.43
COL6A3-203ENST00000353578 AXIN2Q9Y2T1 843 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 DISP1Q96F81 1524 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 BAZ2AQ9UIF9 1905 aaKnown RBP12.39□□□□□ -0.43
COL6A3-203ENST00000353578 J3QRK9 145 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 HTRA2O43464 458 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-203ENST00000353578 MAOAP21397 527 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 GJB7Q6PEY0 223 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 FBXL8Q96CD0 374 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 C10orf90Q96M02 699 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 CHIAQ9BZP6 476 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 ELOVL4Q9GZR5 314 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 REEP4Q9H6H4 257 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 TBC1D17Q9HA65 648 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 NUBP2Q9Y5Y2 271 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 NELFEP18615 380 aaKnown RBP12.39□□□□□ -0.43
COL6A3-203ENST00000353578 XKP51811 444 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 RHOAP61586 193 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 SIM2Q14190 667 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-203ENST00000353578 LRRC70Q7Z2Q7 622 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 GHDCQ8N2G8 530 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 C1orf216Q8TAB5 229 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 ING5Q8WYH8 240 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 PIGKQ92643 395 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 ARL6Q9H0F7 186 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 GJA3Q9Y6H8 435 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 DEPDC5O75140 1603 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 ARHGEF28Q8N1W1 1705 aaKnown RBP12.39□□□□□ -0.43
COL6A3-203ENST00000353578 PLK1P53350 603 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 TXNL4AP83876 142 aaKnown RBP12.39□□□□□ -0.43
COL6A3-203ENST00000353578 SLC1A5Q15758 541 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 PRAMEF13Q5VWM6 474 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 ATG9AQ7Z3C6 839 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 TRIM43Q96BQ3 446 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-203ENST00000353578 TIFAQ96CG3 184 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 PPM1MQ96MI6 270 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 ENAMQ9NRM1 1142 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 FAM230AA0A1W2PPH8 454 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 M0R129 80 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 ETV3P41162 512 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 GPSM2P81274 684 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 ZNF709Q8N972 641 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 VPS28Q9UK41 221 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 NOP16Q9Y3C1 178 aaKnown RBP12.39□□□□□ -0.43
COL6A3-203ENST00000353578 IGSF6O95976 241 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 EPORP19235 508 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 TCEA1P23193 301 aaKnown RBP12.39□□□□□ -0.43
COL6A3-203ENST00000353578 KELP23276 732 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 TMEM132BQ14DG7 1078 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 FAM171BQ6P995 826 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 FAM46DQ8NEK8 389 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 ANKRD60Q9BZ19 345 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 MEPEQ9NQ76 525 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-203ENST00000353578 ELAVL2Q12926 359 aaKnown RBP12.39□□□□□ -0.43
COL6A3-203ENST00000353578 CHST13Q8NET6 341 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 TCF25Q9BQ70 676 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 HERVK_113P63132 956 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 AP5B1Q2VPB7 878 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 ERVK-6Q9BXR3 956 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 IDI2Q9BXS1 227 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 PRSS48Q7RTY5 328 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 RETREG3Q86VR2 466 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 OR4K3Q96R72 315 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 TTLL2Q9BWV7 592 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 CHRAC1Q9NRG0 131 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 HMX3A6NHT5 357 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 F8W036 122 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 KLHL26Q53HC5 615 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 DDX53Q86TM3 631 aaKnown RBP12.38□□□□□ -0.43
COL6A3-203ENST00000353578 UPF1Q92900 1129 aaKnown RBP eCLIP12.38□□□□□ -0.43
COL6A3-203ENST00000353578 DAPL1A0PJW8 107 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 KRBA1A5PL33 1030 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 TOR1BO14657 336 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 HK1P19367 917 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 PSMB4P28070 264 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 KHKP50053 298 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 HK3P52790 923 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 PTPN20Q4JDL3 420 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 ATAD3CQ5T2N8 411 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 DSG4Q86SJ6 1040 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 WNT8BQ93098 351 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 A0A1W2PPW3 197 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 CLDN9O95484 217 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 VAMP1P23763 118 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 XKR4Q5GH76 650 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 DGLUCYQ7Z3D6 616 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 GPER1Q99527 375 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 GAREM1Q9H706 876 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 MT-ND5P03915 603 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms