RNA–Protein interactions for RNA: ENST00000344627.10

SGCA-202, Transcript of sarcoglycan alpha, humanhuman

TSL 1 (best) BASIC

Gene SGCA, Length 1,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-202ENST00000344627 C4orf17Q53FE4 359 aa12□□□□□ -0.49
SGCA-202ENST00000344627 AARS2Q5JTZ9 985 aaKnown RBP12□□□□□ -0.49
SGCA-202ENST00000344627 PCID2Q5JVF3 399 aa12□□□□□ -0.49
SGCA-202ENST00000344627 PLEKHS1Q5SXH7 462 aa12□□□□□ -0.49
SGCA-202ENST00000344627 PTRHD1Q6GMV3 140 aaKnown RBP12□□□□□ -0.49
SGCA-202ENST00000344627 SPESP1Q6UW49 350 aa12□□□□□ -0.49
SGCA-202ENST00000344627 LDB1Q86U70 411 aaPredicted RBP12□□□□□ -0.49
SGCA-202ENST00000344627 C2orf73Q8N5S3 287 aaPredicted RBP12□□□□□ -0.49
SGCA-202ENST00000344627 SLC38A9Q8NBW4 561 aa12□□□□□ -0.49
SGCA-202ENST00000344627 ADAMTS17Q8TE56 1095 aa12□□□□□ -0.49
SGCA-202ENST00000344627 SSC4DQ8WTU2 575 aa12□□□□□ -0.49
SGCA-202ENST00000344627 FER1L6-AS2Q96M78 137 aa12□□□□□ -0.49
SGCA-202ENST00000344627 PITPNM3Q9BZ71 974 aa12□□□□□ -0.49
SGCA-202ENST00000344627 CHRAC1Q9NRG0 131 aa12□□□□□ -0.49
SGCA-202ENST00000344627 TCFL5Q9UL49 500 aa12□□□□□ -0.49
SGCA-202ENST00000344627 RIMKLBQ9ULI2 386 aa12□□□□□ -0.49
SGCA-202ENST00000344627 MED13Q9UHV7 2174 aa12□□□□□ -0.49
SGCA-202ENST00000344627 NAV2Q8IVL1 2488 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 COL12A1Q99715 3063 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 SLC5A10A0PJK1 596 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 BLACEA4D250 179 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 ARGFXA6NJG6 315 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 BHMG1C9JSJ3 638 aaPredicted RBP11.99□□□□□ -0.49
SGCA-202ENST00000344627 CD3EAPO15446 510 aaKnown RBP11.99□□□□□ -0.49
SGCA-202ENST00000344627 ZNF749O43361 778 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 NDUFS3O75489 264 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 ALPPP05187 535 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 APOA4P06727 396 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 CHRM5P08912 532 aaPredicted RBP11.99□□□□□ -0.49
SGCA-202ENST00000344627 CCR7P32248 378 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 RORAP35398 523 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 KCNJ1P48048 391 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 CHAF1BQ13112 559 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 SEMA3AQ14563 771 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 TMED2Q15363 201 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 DEFB110Q30KQ9 67 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 PTCHD3Q3KNS1 767 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 LCN10Q6JVE6 187 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 C4orf22Q6V702 233 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 CDHR3Q6ZTQ4 885 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 ZNF534Q76KX8 674 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 SYTL1Q8IYJ3 562 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 KRT222Q8N1A0 295 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 ENDOVQ8N8Q3 282 aaKnown RBP11.99□□□□□ -0.49
SGCA-202ENST00000344627 C19orf47Q8N9M1 422 aaKnown RBP11.99□□□□□ -0.49
SGCA-202ENST00000344627 OR5K2Q8NHB8 316 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 PROKR1Q8TCW9 393 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 SKA2Q8WVK7 121 aaPredicted RBP11.99□□□□□ -0.49
SGCA-202ENST00000344627 ASZ1Q8WWH4 475 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 TM9SF4Q92544 642 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 PNPLA2Q96AD5 504 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 SMAD5Q99717 465 aaKnown RBP11.99□□□□□ -0.49
SGCA-202ENST00000344627 SLAMF7Q9NQ25 335 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 SPHK1Q9NYA1 384 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 BFARQ9NZS9 450 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 CIDEBQ9UHD4 219 aa11.99□□□□□ -0.49
SGCA-202ENST00000344627 GPN3Q9UHW5 284 aaPredicted RBP11.99□□□□□ -0.49
SGCA-202ENST00000344627 DRG1Q9Y295 367 aaKnown RBP11.99□□□□□ -0.49
SGCA-202ENST00000344627 A0A0J9YY10 115 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 K7EM74 188 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 AP3B1O00203 1094 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 PRMT5O14744 637 aaPredicted RBP11.98□□□□□ -0.49
SGCA-202ENST00000344627 DNAJB5O75953 348 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 OR2B3O76000 313 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 RPN2P04844 631 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 NPY2RP49146 381 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 TTPAP49638 278 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 VPS41P49754 854 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 IL10RAQ13651 578 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 SSPNQ14714 243 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 SIX1Q15475 284 aaPredicted RBP11.98□□□□□ -0.49
SGCA-202ENST00000344627 TRIP13Q15645 432 aaPredicted RBP11.98□□□□□ -0.49
SGCA-202ENST00000344627 KCTD19Q17RG1 926 aaPredicted RBP11.98□□□□□ -0.49
SGCA-202ENST00000344627 DNAJC21Q5F1R6 531 aaKnown RBP11.98□□□□□ -0.49
SGCA-202ENST00000344627 C1orf189Q5VU69 101 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 MLIPQ5VWP3 458 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 TTC23LQ6PF05 361 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 CES3Q6UWW8 571 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 TAX1BP1Q86VP1 789 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 VRK3Q8IV63 474 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 LRRC8AQ8IWT6 810 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 TRIM58Q8NG06 486 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 LKAAEAR1Q8TD35 194 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 COG1Q8WTW3 980 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 TCTN2Q96GX1 697 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 SGSM3Q96HU1 749 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 OR2A14Q96R47 310 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 CARD6Q9BX69 1037 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 TRIM55Q9BYV6 548 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 FAM60AQ9NP50 221 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 HOMER3Q9NSC5 361 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 PCMTD2Q9NV79 361 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 GPR83Q9NYM4 423 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 OR6C2Q9NZP2 312 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.98□□□□□ -0.49
SGCA-202ENST00000344627 MARCH4Q9P2E8 410 aaPredicted RBP11.98□□□□□ -0.49
SGCA-202ENST00000344627 GNPTGQ9UJJ9 305 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 TTC7AQ9ULT0 858 aaPredicted RBP11.98□□□□□ -0.49
SGCA-202ENST00000344627 ZKSCAN5Q9Y2L8 839 aa11.98□□□□□ -0.49
SGCA-202ENST00000344627 PDGFAP04085 211 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms