RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 WDR47O94967 919 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 CDH2P19022 906 aaPredicted RBP18.9■□□□□ 0.62
COL9A3-201ENST00000343916 SLC5A2P31639 672 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 PTCHD3Q3KNS1 767 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 CYBRD1Q53TN4 286 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 ZNF648Q5T619 568 aaPredicted RBP18.9■□□□□ 0.62
COL9A3-201ENST00000343916 PRR23BQ6ZRT6 265 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 CHCHD4Q8N4Q1 142 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 FBXO30Q8TB52 745 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 AURKBQ96GD4 344 aaPredicted RBP18.9■□□□□ 0.62
COL9A3-201ENST00000343916 CPEB1Q9BZB8 566 aaKnown RBP18.9■□□□□ 0.62
COL9A3-201ENST00000343916 FADS3Q9Y5Q0 445 aa18.9■□□□□ 0.62
COL9A3-201ENST00000343916 ANXA6P08133 673 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 PABPC1P11940 636 aaKnown RBP18.89■□□□□ 0.61
COL9A3-201ENST00000343916 PTPN5P54829 565 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 PHC1P78364 1004 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 HPCAP84074 193 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 CYP4F3Q08477 520 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 TEAD2Q15562 447 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 NEK5Q6P3R8 708 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 ENPP6Q6UWR7 440 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 CCDC149Q6ZUS6 474 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 RNF175Q8N4F7 328 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 NAT16Q8N8M0 369 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 OR2A12Q8NGT7 310 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 P2RY13Q9BPV8 354 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 ATG10Q9H0Y0 220 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 PARVBQ9HBI1 364 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 UTS2RQ9UKP6 389 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 SLC8A2Q9UPR5 921 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 SLC22A14Q9Y267 594 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 TRIM43BA6NCK2 446 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 HIDE1A8MVS5 230 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 CLOCKO15516 846 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 KRT6AP02538 564 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 KRT6BP04259 564 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 ATP1B2P14415 290 aaPredicted RBP18.89■□□□□ 0.61
COL9A3-201ENST00000343916 ITPKAP23677 461 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 TACR1P25103 407 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 KRT6CP48668 564 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 ADRM1Q16186 407 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 POM121L1PQ3SYA9 428 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 TMEM215Q68D42 235 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 ANKRD46Q86W74 232 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 C10orf111Q8N326 155 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 OSCP1Q8WVF1 389 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 TRIM43Q96BQ3 446 aaPredicted RBP18.89■□□□□ 0.61
COL9A3-201ENST00000343916 TSSK3Q96PN8 268 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 BDH2Q9BUT1 245 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 SLC12A9Q9BXP2 914 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 MTG2Q9H4K7 406 aa18.89■□□□□ 0.61
COL9A3-201ENST00000343916 PRAMEF4O60810 478 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 IL6P05231 212 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 ADH1AP07327 375 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 LINC00271P0C7V0 271 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 TYRP14679 529 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 TCF3P15923 654 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 PLCL1Q15111 1095 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 NKG7Q16617 165 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 PRAMEF9Q5VWM5 478 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 GCNT7Q6ZNI0 430 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 DHRSXQ8N5I4 330 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 ZNF548Q8NEK5 533 aaPredicted RBP18.88■□□□□ 0.61
COL9A3-201ENST00000343916 CYB5D2Q8WUJ1 264 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 ASB11Q8WXH4 323 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 ELOVL6Q9H5J4 265 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 LMCD1Q9NZU5 365 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 HCFC2Q9Y5Z7 792 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 NUP214P35658 2090 aaPredicted RBP18.88■□□□□ 0.61
COL9A3-201ENST00000343916 OR2AG2A6NM03 316 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 UPK1AO00322 258 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 GSTA4O15217 222 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 GSNP06396 782 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 HIST1H2AGP0C0S8 130 aaPredicted RBP18.88■□□□□ 0.61
COL9A3-201ENST00000343916 CDK4P11802 303 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 HIST1H2ADP20671 130 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 ALDH3B2P48448 385 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 IST1P53990 364 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 ERVFC1P60507 584 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 ZIK1Q3SY52 487 aaPredicted RBP18.88■□□□□ 0.61
COL9A3-201ENST00000343916 GDPD4Q6W3E5 623 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 Q6ZVL8 140 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 HSD11B1LQ7Z5J1 315 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 ADIPOR2Q86V24 386 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 HM13Q8TCT9 377 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 GFM2Q969S9 779 aaKnown RBP18.88■□□□□ 0.61
COL9A3-201ENST00000343916 TMBIM1Q969X1 311 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 HIST1H2AHQ96KK5 128 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 ZNF641Q96N77 438 aaPredicted RBP18.88■□□□□ 0.61
COL9A3-201ENST00000343916 HIST1H2AJQ99878 128 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 H2AFJQ9BTM1 129 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 HPS4Q9NQG7 708 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 PCDHB14Q9Y5E9 798 aa18.88■□□□□ 0.61
COL9A3-201ENST00000343916 LRATO95237 230 aa18.87■□□□□ 0.61
COL9A3-201ENST00000343916 RAP2AP10114 183 aa18.87■□□□□ 0.61
COL9A3-201ENST00000343916 WEE1P30291 646 aa18.87■□□□□ 0.61
COL9A3-201ENST00000343916 CREMQ03060 361 aa18.87■□□□□ 0.61
COL9A3-201ENST00000343916 MYBPC3Q14896 1274 aa18.87■□□□□ 0.61
COL9A3-201ENST00000343916 LRRC26Q2I0M4 334 aa18.87■□□□□ 0.61
COL9A3-201ENST00000343916 METTL2BQ6P1Q9 378 aaKnown RBP18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms