RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 RAB28P51157 221 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 TPTEP56180 551 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ABATP80404 500 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 TBL3Q12788 808 aaKnown RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 EFEMP1Q12805 493 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 PTP4A2Q12974 167 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 SP140Q13342 867 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 RAB31Q13636 194 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ASTE1Q2TB18 679 aaPredicted RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 TCEAL6Q6IPX3 200 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 C10orf53Q8N6V4 93 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 TSPAN14Q8NG11 270 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 FNDC8Q8TC99 324 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 TNFAIP8L1Q8WVP5 186 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 PIH1D2Q8WWB5 315 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 FATE1Q969F0 183 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 CLPTM1LQ96KA5 538 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 TM9SF2Q99805 663 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 TBCDQ9BTW9 1192 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 CEP41Q9BYV8 373 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 RAB6BQ9NRW1 208 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 SDHAF2Q9NX18 166 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 VAPAQ9P0L0 249 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 SCML1Q9UN30 329 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 SLC12A4Q9UP95 1085 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 WASF3Q9UPY6 502 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 RPS6KL1Q9Y6S9 549 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 SLC12A8A0AV02 714 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 NAP1L6A6NFF2 107 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 M0QYV0 167 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 CLDN4O14493 209 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 PRODHO43272 600 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 PROM1O43490 865 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 PRKD3O94806 890 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ARHGEF15O94989 841 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 SCELO95171 688 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 CHRNA1P02708 482 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 COX4I1P13073 169 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 PTPN1P18031 435 aaKnown RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ART1P52961 327 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 MAPK12P53778 367 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 CAV3P56539 151 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 NME5P56597 212 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 YBEYP58557 167 aaPredicted RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 CD81P60033 236 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 IFI35P80217 286 aaPredicted RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 QPCTQ16769 361 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 SMU1Q2TAY7 513 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 AMZ1Q400G9 498 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ZNF311Q5JNZ3 666 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 MANEALQ5VSG8 457 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 C1orf189Q5VU69 101 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 FAM173BQ6P4H8 233 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 NOXA1Q86UR1 476 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ARMC8Q8IUR7 673 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 CENPLQ8N0S6 344 aaPredicted RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 RBM15BQ8NDT2 890 aaKnown RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 TEX47Q8TBZ9 253 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 NETO1Q8TDF5 533 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 KCNE4Q8WWG9 221 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 CNDP2Q96KP4 475 aaKnown RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 PGLYRP2Q96PD5 576 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 MAP3K3Q99759 626 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 NT5DC2Q9H857 520 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 EIF2B3Q9NR50 452 aaKnown RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 PSMD13Q9UNM6 376 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 RPL36Q9Y3U8 105 aaKnown RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 MTF2Q9Y483 593 aaPredicted RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 SIPA1L1O43166 1804 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 NCANO14594 1321 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 SH3PXD2BA1X283 911 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 C5orf60A6NFR6 353 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 E7ENX8 843 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 OR10H2O60403 315 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 SUPT7LO94864 414 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 AGFG2O95081 481 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 KLRK1P26718 216 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 HNRNPH3P31942 346 aaKnown RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 TRIM23P36406 574 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 TNFRSF4P43489 277 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 LRRC41Q15345 812 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 MPPE1Q53F39 396 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 CDKAL1Q5VV42 579 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 RAET1GQ6H3X3 334 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 SLC13A5Q86YT5 568 aaPredicted RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 EGFL6Q8IUX8 553 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ZNF548Q8NEK5 533 aaPredicted RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ZNF671Q8TAW3 534 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 CLP1Q92989 425 aaKnown RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 NKD1Q969G9 470 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 COL26A1Q96A83 441 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 C18orf25Q96B23 403 aaPredicted RBP3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ELMOD3Q96FG2 381 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 ATP13A3Q9H7F0 1226 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 SIK3Q9Y2K2 1263 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 RAP2CQ9Y3L5 183 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 RIPK3Q9Y572 518 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 DPPA5A6NC42 116 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 KLRC4-KLRK1H3BQV0 150 aa3.23□□□□□ -1.89
CSMD3-202ENST00000339701 PHYHO14832 338 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms