RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ACTR6Q9GZN1 396 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 XPNPEP1Q9NQW7 623 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 CCM2LQ9NUG4 571 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 ASB3Q9Y575 518 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 FAM172BPA6NC97 362 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 TFECO14948 347 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 NRIP1P48552 1158 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 DUOXA1Q1HG43 343 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 PAOXQ6QHF9 649 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 COMMD2Q86X83 199 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 ADAMTS15Q8TE58 950 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 TRUB1Q8WWH5 349 aaKnown RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 AKTIPQ9H8T0 292 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 RASSF1Q9NS23 344 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 GRIP1Q9Y3R0 1128 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 TSPAN3O60637 253 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 SNNO75324 88 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 LAMP2P13473 410 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 DDX6P26196 483 aaKnown RBP eCLIP10.09□□□□□ -0.792e-8■■■■■ 56.6
CCDC88A-202ENST00000336838 RBM34P42696 430 aaKnown RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 SCAPQ12770 1279 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 OGFRL1Q5TC84 451 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 UXS1Q8NBZ7 420 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 GRIN3AQ8TCU5 1115 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 OR10H1Q9Y4A9 318 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 FOCADQ5VW36 1801 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 A0A0G2JLL6 359 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 IRF6O14896 467 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 GATBO75879 557 aaKnown RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 HLA-DQA2P01906 255 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 GRIA1P42261 906 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 RPL19P84098 196 aaKnown RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 SERINC3Q13530 473 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 SLC10A6Q3KNW5 377 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 PRRT2Q7Z6L0 340 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 GALNT7Q86SF2 657 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 SPATA6LQ8N4H0 392 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 ZNF641Q96N77 438 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 PCDHB3Q9Y5E6 796 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 EIF3FO00303 357 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 DFNA5O60443 496 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 SAGP10523 405 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 HOXD8P13378 290 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 XRCC1P18887 633 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 RALGPS2Q86X27 583 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 TNFAIP8L1Q8WVP5 186 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 OSTF1Q92882 214 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 CXorf40BQ96DE9 158 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 CPNE2Q96FN4 548 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 PYURFQ96I23 114 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 TRIM3O75382 744 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 PIAS1O75925 651 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 SLC2A2P11168 524 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 HOXD13P35453 343 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 FADDQ13158 208 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 COL9A3Q14050 684 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 ZNF630Q2M218 657 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 TPGS2Q68CL5 300 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 DOK6Q6PKX4 331 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 DUSP11O75319 330 aaKnown RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 RSL1D1O76021 490 aaKnown RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 ZNF30P17039 623 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 MAB21L1Q13394 359 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 SERPINA13PQ6UXR4 307 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 GALNT5Q7Z7M9 940 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 KCNJ9Q92806 393 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 CNDP2Q96KP4 475 aaKnown RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 POLR2J3Q9H1A7 115 aaKnown RBP10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 SLC32A1Q9H598 525 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 OR2AG2A6NM03 316 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 SOCS5O75159 536 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 PORP16435 677 aaPredicted RBP10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 STC1P52823 247 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 KCNC4Q03721 635 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 SLC25A24Q6NUK1 477 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 DENND1AQ8TEH3 1009 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 OVCA2Q8WZ82 227 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 TSSK3Q96PN8 268 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 ASF1AQ9Y294 204 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 TAF1P21675 1872 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 CLDN5O00501 218 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 PTTG1O95997 202 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 NR2C1P13056 603 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 MYF6P23409 242 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 GPX6P59796 221 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 MAXP61244 160 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 TMPRSS11BQ86T26 416 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 RANBP3Q9H6Z4 567 aaPredicted RBP10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 MOCS1Q9NZB8 636 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 SCML2Q9UQR0 700 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 DLGAP1O14490 977 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 GADD45GO95257 159 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 IFNA6P05013 189 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 SLC14A2Q15849 920 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 CA9Q16790 459 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 SLC35F5Q8WV83 523 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 UPF1Q92900 1129 aaKnown RBP eCLIP10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 DNAJC1Q96KC8 554 aaKnown RBP10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 CCDC32Q9BV29 185 aa10.08□□□□□ -0.8
CCDC88A-202ENST00000336838 NFKBIL1Q9UBC1 381 aaPredicted RBP10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms