RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 AP2A1O95782 977 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 AMHP03971 560 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 IL1RNP18510 177 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 ARRB2P32121 409 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 SPRP35270 261 aaPredicted RBP6.52□□□□□ -1.37
ZNF540-201ENST00000316433 NUP62P37198 522 aaPredicted RBP6.52□□□□□ -1.37
ZNF540-201ENST00000316433 HK3P52790 923 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 FOXK2Q01167 660 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 BMPR2Q13873 1038 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 SMAD2Q15796 467 aaKnown RBP6.52□□□□□ -1.37
ZNF540-201ENST00000316433 IMPG1Q17R60 797 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 CYP27C1Q4G0S4 372 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 NCBP2-AS2Q69YL0 99 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 CASC4Q6P4E1 433 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 PTRH1Q86Y79 214 aaKnown RBP6.52□□□□□ -1.37
ZNF540-201ENST00000316433 RFX6Q8HWS3 928 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 AQP12AQ8IXF9 295 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 PCDH20Q8N6Y1 951 aaKnown RBP6.52□□□□□ -1.37
ZNF540-201ENST00000316433 OR5T2Q8NGG2 359 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.52□□□□□ -1.37
ZNF540-201ENST00000316433 MRPL48Q96GC5 212 aaKnown RBP6.52□□□□□ -1.37
ZNF540-201ENST00000316433 VPS39Q96JC1 886 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 SPACA7Q96KW9 195 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 LINC00052Q96N35 136 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 ZNF285Q96NJ3 590 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 NODALQ96S42 347 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 CCDC32Q9BV29 185 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 C1QTNF3Q9BXJ4 246 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 GPR63Q9BZJ6 419 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 WNT5BQ9H1J7 359 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 XPNPEP3Q9NQH7 507 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 CATSPERZQ9NTU4 200 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 C14orf119Q9NWQ9 140 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 AURKCQ9UQB9 309 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 NAALAD2Q9Y3Q0 740 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 A3GALT2U3KPV4 340 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 CHD5Q8TDI0 1954 aa6.52□□□□□ -1.37
ZNF540-201ENST00000316433 MTMR11A4FU01 709 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 SLC9B1P1A6NJY1 282 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 WASH4PA8MWX3 477 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 RHOBTB1O94844 696 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 CELF2O95319 508 aaKnown RBP6.51□□□□□ -1.37
ZNF540-201ENST00000316433 MATN4O95460 622 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 CST3P01034 146 aaPredicted RBP6.51□□□□□ -1.37
ZNF540-201ENST00000316433 AHSGP02765 367 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 IL6P05231 212 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 APEHP13798 732 aaKnown RBP6.51□□□□□ -1.37
ZNF540-201ENST00000316433 HSD17B1P14061 328 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 TRHRP34981 398 aaPredicted RBP6.51□□□□□ -1.37
ZNF540-201ENST00000316433 PNPLA4P41247 253 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 CAPZA1P52907 286 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 SNAP25P60880 206 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 LAMTOR4Q0VGL1 99 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 ERV3-1Q14264 604 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 TUSC1Q2TAM9 212 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 HKDC1Q2TB90 917 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 ATP13A4Q4VNC1 1196 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 PITRM1Q5JRX3 1037 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 LIPMQ5VYY2 423 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 AFMIDQ63HM1 303 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 LRRC8EQ6NSJ5 796 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 SWSAP1Q6NVH7 229 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 IKBIPQ70UQ0 350 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 RRM2BQ7LG56 351 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 C12orf40Q86WS4 652 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 RASAL3Q86YV0 1011 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 CCDC24Q8N4L8 307 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 C1orf127Q8N9H9 656 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 ANKRD52Q8NB46 1076 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 MAPK15Q8TD08 544 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 UBASH3BQ8TF42 649 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 RORBQ92753 470 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 TADA1Q96BN2 335 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 ELMO2Q96JJ3 720 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 CMTM3Q96MX0 182 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 TOX2Q96NM4 488 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 APBA2Q99767 749 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 ZNF251Q9BRH9 671 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 COPS4Q9BT78 406 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 TRIM62Q9BVG3 475 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 CDT1Q9H211 546 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 DCSTAMPQ9H295 470 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 DBNDD1Q9H9R9 158 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 ARNT2Q9HBZ2 717 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 DNAJC11Q9NVH1 559 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 POLG2Q9UHN1 485 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 RAPGEFL1Q9UHV5 662 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 FKBP7Q9Y680 259 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 AP1M2Q9Y6Q5 423 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 PRORSD1PA6NEY8 169 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 TRABD2BA6NFA1 517 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 TCAF2A6NFQ2 919 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 TTLL8A6PVC2 850 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 CXorf49A8MYA2 514 aaPredicted RBP6.51□□□□□ -1.37
ZNF540-201ENST00000316433 WRBO00258 174 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 EEF2KO00418 725 aaKnown RBP6.51□□□□□ -1.37
ZNF540-201ENST00000316433 TPST1O60507 370 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 NIPSNAP2O75323 286 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 IFNB1P01574 187 aa6.51□□□□□ -1.37
ZNF540-201ENST00000316433 ALPPP05187 535 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms