RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 IQCF5A8MTL0 148 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 MID1O15344 667 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 SPINT1O43278 529 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 SNX2O60749 519 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 SIX3O95343 332 aaPredicted RBP16.41■□□□□ 0.22
CPSF4-201ENST00000292476 TSPAN12O95859 305 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 CLPTM1O96005 669 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 CHEK2O96017 543 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 EGFP01133 1207 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 UROSP10746 265 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 BMP2P12643 396 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 HOXB2P14652 356 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 METAP1P53582 386 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 POLE2P56282 527 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 SLC44A4Q53GD3 710 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 EOGTQ5NDL2 527 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 PLEKHS1Q5SXH7 462 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 FRA10AC1Q70Z53 315 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 GPSM1Q86YR5 675 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 HOMEZQ8IX15 550 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 HDDC3Q8N4P3 179 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 IL17RCQ8NAC3 791 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 OR9I1Q8NGQ6 314 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 NAT14Q8WUY8 206 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 FUBP1Q96AE4 644 aaKnown RBP16.41■□□□□ 0.22
CPSF4-201ENST00000292476 SLCO4A1Q96BD0 722 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 PCDHAC1Q9H158 963 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 GALPQ9UBC7 116 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 PRSS21Q9Y6M0 314 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 ZDBF2Q9HCK1 2354 aa16.41■□□□□ 0.22
CPSF4-201ENST00000292476 ATP6AP2A0A1C7CYW4 349 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 NR5A2O00482 541 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 MAN2B1O00754 1011 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 MMP20O60882 483 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 ATP6AP2O75787 350 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 ESRRBO95718 433 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 S100BP04271 92 aaPredicted RBP16.4■□□□□ 0.22
CPSF4-201ENST00000292476 GSTM1P09488 218 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 TSPAN8P19075 237 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 DRD3P35462 400 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 MAPK9P45984 424 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 GPR1P46091 355 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 RPS14P62263 151 aaKnown RBP16.4■□□□□ 0.22
CPSF4-201ENST00000292476 GSTM4Q03013 218 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 APOFQ13790 326 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 INPP5AQ14642 412 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 AGERQ15109 404 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 TSNQ15631 228 aaKnown RBP16.4■□□□□ 0.22
CPSF4-201ENST00000292476 MLF2Q15773 248 aaPredicted RBP16.4■□□□□ 0.22
CPSF4-201ENST00000292476 XKR7Q5GH72 579 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 THEMIS2Q5TEJ8 643 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 LCN8Q6JVE9 175 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 BLOC1S3Q6QNY0 202 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 RETREG3Q86VR2 466 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 CHERPQ8IWX8 916 aaKnown RBP16.4■□□□□ 0.22
CPSF4-201ENST00000292476 DDIASQ8IXT1 998 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 TRPC4APQ8TEL6 797 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 EZH1Q92800 747 aaPredicted RBP16.4■□□□□ 0.22
CPSF4-201ENST00000292476 TUBGCP3Q96CW5 907 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 DGCR14Q96DF8 476 aaKnown RBP16.4■□□□□ 0.22
CPSF4-201ENST00000292476 ZNF514Q96K75 400 aaPredicted RBP16.4■□□□□ 0.22
CPSF4-201ENST00000292476 SLC30A3Q99726 388 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 FAM126AQ9BYI3 521 aaPredicted RBP16.4■□□□□ 0.22
CPSF4-201ENST00000292476 BRINP2Q9C0B6 783 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 TUBB1Q9H4B7 451 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 TBC1D17Q9HA65 648 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 ZDHHC4Q9NPG8 344 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 CCM2LQ9NUG4 571 aaPredicted RBP16.4■□□□□ 0.22
CPSF4-201ENST00000292476 MAP10Q9P2G4 905 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 GPR45Q9Y5Y3 372 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 COL4A2P08572 1712 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 RAD51BO15315 384 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 HNRNPRO43390 633 aaKnown RBP16.4■□□□□ 0.22
CPSF4-201ENST00000292476 CRCPO75575 148 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 KLF8O95600 359 aaPredicted RBP16.4■□□□□ 0.22
CPSF4-201ENST00000292476 NPPAP01160 153 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 HGFP14210 728 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 CD72P21854 359 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 CA5AP35218 305 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 MYBPC1Q00872 1141 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 B4GALNT1Q00973 533 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 PDCD4Q53EL6 469 aaKnown RBP16.4■□□□□ 0.22
CPSF4-201ENST00000292476 RAET1GQ6H3X3 334 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 BORAQ6PGQ7 559 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.4■□□□□ 0.22
CPSF4-201ENST00000292476 ERMP1Q7Z2K6 904 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 OR56A4Q8NGH8 313 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 ASZ1Q8WWH4 475 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 NSUN5Q96P11 429 aaKnown RBP16.4■□□□□ 0.22
CPSF4-201ENST00000292476 AIG1Q9NVV5 245 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 NUDT4Q9NZJ9 180 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 ACTR3BQ9P1U1 418 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 PCTPQ9UKL6 214 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 TMPRSS11EQ9UL52 423 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 CNOT6Q9ULM6 557 aaKnown RBP16.4■□□□□ 0.22
CPSF4-201ENST00000292476 NCKAP1Q9Y2A7 1128 aa16.4■□□□□ 0.22
CPSF4-201ENST00000292476 TNPO3Q9Y5L0 923 aaKnown RBP16.4■□□□□ 0.22
CPSF4-201ENST00000292476 PLXNA2O75051 1894 aa16.39■□□□□ 0.21
CPSF4-201ENST00000292476 PABPN1LA6NDY0 278 aaKnown RBP16.39■□□□□ 0.21
CPSF4-201ENST00000292476 NPEPPSL1A6NEC2 478 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms