RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ZBTB7AO95365 584 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CBSLP0DN79 551 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 NDUFB7P17568 137 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 M6PRP20645 277 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CBSP35520 551 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 RBP5P82980 135 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 MYL7Q01449 175 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 LSAMPQ13449 338 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 DPP8Q6V1X1 898 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 GDPD3Q7L5L3 318 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 COMMD2Q86X83 199 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 OR9A2Q8NGT5 310 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 OXER1Q8TDS5 423 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 TM9SF4Q92544 642 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 RAB34Q9BZG1 259 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 IMPACTQ9P2X3 320 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 EXTL2Q9UBQ6 330 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 SH3PXD2BA1X283 911 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 MFSD2BA6NFX1 497 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 KIAA0355O15063 1070 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 IGFBP4P22692 258 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 AHRP35869 848 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 MAGEA11P43364 429 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ADAM15Q13444 863 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 DRAP1Q14919 205 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 NFATC4Q14934 902 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CNN3Q15417 329 aaKnown RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 C2orf76Q3KRA6 126 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF546Q86UE3 836 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 TAC4Q86UU9 113 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 DAZAP1Q96EP5 407 aaKnown RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 C1orf50Q9BV19 199 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 MTIF3Q9H2K0 278 aaKnown RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 PER1O15534 1290 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ALPPP05187 535 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CYP21A2P08686 494 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ALPPL2P10696 532 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 MAKP20794 623 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 MRPL49Q13405 166 aaKnown RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 IL18Q14116 193 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 SLC39A14Q15043 492 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 PHKG1Q16816 387 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ELMO1Q92556 727 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CREB3L1Q96BA8 519 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ITCHQ96J02 903 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 MARK4Q96L34 752 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 FER1L6-AS2Q96M78 137 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CCDC115Q96NT0 180 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 AKIRIN1Q9H9L7 192 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ZFP69BQ9UJL9 534 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 AK5Q9Y6K8 562 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 LOC390937A0A1W2PQ73 354 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 GPR37O15354 613 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CD3EAPO15446 510 aaKnown RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 TJP3O95049 919 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 RPP14O95059 124 aaKnown RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 GRIA2P42262 883 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 PRCPP42785 496 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 DUSP4Q13115 394 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ITGA9Q13797 1035 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ATP6AP1Q15904 470 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 TOR2AQ5JU69 321 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 FAM46CQ5VWP2 391 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 PAPD7Q5XG87 772 aaKnown RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 GCDHQ92947 438 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 DPYSL5Q9BPU6 564 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 PNPOQ9NVS9 261 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF705GA8MUZ8 300 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 BHLHE40O14503 412 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 TYMPP19971 482 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CMA1P23946 247 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 SOAT1P35610 550 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 PEX3P56589 373 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 GABPAQ06546 454 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF33AQ06730 810 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 RASGEF1BQ0VAM2 473 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CHIT1Q13231 466 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 KCTD19Q17RG1 926 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 SPDYE7PQ495Y7 208 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 NADK2Q4G0N4 442 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 MEDAGQ5VYS4 303 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 RPUSD3Q6P087 351 aaKnown RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 USP53Q70EK8 1073 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ERMP1Q7Z2K6 904 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 RASGRP3Q8IV61 690 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 SIRT2Q8IXJ6 389 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 STXBP6Q8NFX7 210 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 DLG3Q92796 817 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ZC3H12CQ9C0D7 883 aaKnown RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 GPN2Q9H9Y4 310 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ENPP5Q9UJA9 477 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 UGT2A1Q9Y4X1 527 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ATP23Q9Y6H3 246 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 RAB3GAP2Q9H2M9 1393 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 IBTKQ9P2D0 1353 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 RGS9O75916 674 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CDK14O94921 469 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 TDP2O95551 362 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 CA3P07451 260 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 HOXC8P31273 242 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms