RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 AP1M1Q9BXS5 423 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 GBA3Q9H227 469 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 VPS37BQ9H9H4 285 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 ZNHIT6Q9NWK9 470 aaKnown RBP14.49□□□□□ -0.09
SYNE2-228ENST00000639659 CDC23Q9UJX2 597 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 FBXL4Q9UKA2 621 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 PLAGL1Q9UM63 463 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 ICKQ9UPZ9 632 aa14.49□□□□□ -0.09
SYNE2-228ENST00000639659 PRSS44E7EML9 344 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 HNRNPRO43390 633 aaKnown RBP14.48□□□□□ -0.09
SYNE2-228ENST00000639659 ANXA9O76027 345 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 CRTAMO95727 393 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 PRSS56P0CW18 603 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 PRF1P14222 555 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 ELAVL4P26378 380 aaKnown RBP14.48□□□□□ -0.09
SYNE2-228ENST00000639659 RBL1P28749 1068 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 MC4RP32245 332 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 CDKN1CP49918 316 aaPredicted RBP14.48□□□□□ -0.09
SYNE2-228ENST00000639659 XIAPP98170 497 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 BOP1Q14137 746 aaKnown RBP14.48□□□□□ -0.09
SYNE2-228ENST00000639659 ZIC1Q15915 447 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 NKAIN1Q4KMZ8 207 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 ITPRIPL1Q6GPH6 555 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 IGFL3Q6UXB1 125 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 SNX20Q7Z614 316 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 DNAJB14Q8TBM8 379 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 GRHL3Q8TE85 626 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 NDC1Q9BTX1 674 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 HEMGNQ9BXL5 484 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 UNKQ9C0B0 810 aaKnown RBP14.48□□□□□ -0.09
SYNE2-228ENST00000639659 GOLPH3Q9H4A6 298 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 SLC6A20Q9NP91 592 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 SPHK1Q9NYA1 384 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 TRHDEQ9UKU6 1024 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 ASF1AQ9Y294 204 aa14.48□□□□□ -0.09
SYNE2-228ENST00000639659 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.48□□□□□ -0.09
SYNE2-228ENST00000639659 NUP210LQ5VU65 1888 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 A0A0J9YY10 115 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 C5orf60A6NFR6 353 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 ISM1B1AKI9 464 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 AGPSO00116 658 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 UMODP07911 640 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 CHRM5P08912 532 aaPredicted RBP14.47□□□□□ -0.09
SYNE2-228ENST00000639659 CD63P08962 238 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 PSMB4P28070 264 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 SHMT2P34897 504 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 SLC1A1P43005 524 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 AIMP2Q13155 320 aaKnown RBP14.47□□□□□ -0.09
SYNE2-228ENST00000639659 SPARCL1Q14515 664 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 PRPSAP1Q14558 356 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 TFDP3Q5H9I0 405 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 CRB2Q5IJ48 1285 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 UNC5AQ6ZN44 842 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 SHISA6Q6ZSJ9 500 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 FJX1Q86VR8 437 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 KCNMB4Q86W47 210 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 SERPINA9Q86WD7 417 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 FAM20CQ8IXL6 584 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 PARP9Q8IXQ6 854 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 SLC34A3Q8N130 599 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 CLDN19Q8N6F1 224 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 MAGEB10Q96LZ2 347 aaPredicted RBP14.47□□□□□ -0.09
SYNE2-228ENST00000639659 GORASP1Q9BQQ3 440 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 ZDHHC3Q9NYG2 299 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 KLHL20Q9Y2M5 609 aa14.47□□□□□ -0.09
SYNE2-228ENST00000639659 hCG_1818297A0A087WSY0 165 aa14.46□□□□□ -0.09
SYNE2-228ENST00000639659 C17orf113A0A1B0GUU1 675 aa14.46□□□□□ -0.09
SYNE2-228ENST00000639659 SYCE3A1L190 88 aa14.46□□□□□ -0.09
SYNE2-228ENST00000639659 HACD1B0YJ81 288 aa14.46□□□□□ -0.09
SYNE2-228ENST00000639659 CD151P48509 253 aa14.46□□□□□ -0.09
SYNE2-228ENST00000639659 ZNF140P52738 457 aaPredicted RBP14.46□□□□□ -0.09
SYNE2-228ENST00000639659 ZRSR2Q15696 482 aaKnown RBP14.46□□□□□ -0.09
SYNE2-228ENST00000639659 ASTE1Q2TB18 679 aaPredicted RBP14.46□□□□□ -0.09
SYNE2-228ENST00000639659 SYTL3Q4VX76 610 aa14.46□□□□□ -0.09
SYNE2-228ENST00000639659 AGAP7PQ5VUJ5 663 aa14.46□□□□□ -0.09
SYNE2-228ENST00000639659 PRAMEF13Q5VWM6 474 aa14.46□□□□□ -0.09
SYNE2-228ENST00000639659 TLDC1Q6P9B6 456 aa14.46□□□□□ -0.09
SYNE2-228ENST00000639659 NAPRTQ6XQN6 538 aa14.46□□□□□ -0.09
SYNE2-228ENST00000639659 TTLL10Q6ZVT0 673 aa14.46□□□□□ -0.09
SYNE2-228ENST00000639659 METTL27Q8N6F8 245 aaPredicted RBP14.46□□□□□ -0.09
SYNE2-228ENST00000639659 OR8K1Q8NGG5 319 aa14.46□□□□□ -0.09
SYNE2-228ENST00000639659 HEXDCQ8WVB3 486 aa14.46□□□□□ -0.09
SYNE2-228ENST00000639659 DNAJC1Q96KC8 554 aaKnown RBP14.46□□□□□ -0.09
SYNE2-228ENST00000639659 CCDC42Q96M95 316 aa14.46□□□□□ -0.09
SYNE2-228ENST00000639659 AGAP4Q96P64 663 aa14.46□□□□□ -0.09
SYNE2-228ENST00000639659 OR2A14Q96R47 310 aa14.46□□□□□ -0.09
SYNE2-228ENST00000639659 FAM118BQ9BPY3 351 aa14.46□□□□□ -0.09
SYNE2-228ENST00000639659 FERMT1Q9BQL6 677 aa14.46□□□□□ -0.09
SYNE2-228ENST00000639659 SOX17Q9H6I2 414 aaPredicted RBP14.46□□□□□ -0.09
SYNE2-228ENST00000639659 EPS8L2Q9H6S3 715 aa14.46□□□□□ -0.09
SYNE2-228ENST00000639659 SMARCAL1Q9NZC9 954 aa14.46□□□□□ -0.09
SYNE2-228ENST00000639659 SVILO95425 2214 aa14.46□□□□□ -0.1
SYNE2-228ENST00000639659 CCDC78A2IDD5 438 aa14.45□□□□□ -0.1
SYNE2-228ENST00000639659 E2F3O00716 465 aa14.45□□□□□ -0.1
SYNE2-228ENST00000639659 PSTPIP1O43586 416 aa14.45□□□□□ -0.1
SYNE2-228ENST00000639659 TPM3P06753 285 aa14.45□□□□□ -0.1
SYNE2-228ENST00000639659 CTNNA2P26232 953 aa14.45□□□□□ -0.1
SYNE2-228ENST00000639659 ACRV1P26436 265 aa14.45□□□□□ -0.1
SYNE2-228ENST00000639659 GABRA4P48169 554 aa14.45□□□□□ -0.1
SYNE2-228ENST00000639659 MARCKSL1P49006 195 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms