RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 SHCBP1LQ9BZQ2 653 aa11.47□□□□□ -0.57
CLN6-223ENST00000637823 OSGEPL1Q9H4B0 414 aa11.47□□□□□ -0.57
CLN6-223ENST00000637823 SLC32A1Q9H598 525 aa11.47□□□□□ -0.57
CLN6-223ENST00000637823 TRNAU1APQ9NX07 287 aaKnown RBP11.47□□□□□ -0.57
CLN6-223ENST00000637823 OPTCQ9UBM4 332 aa11.47□□□□□ -0.57
CLN6-223ENST00000637823 DCTN4Q9UJW0 460 aa11.47□□□□□ -0.57
CLN6-223ENST00000637823 PSMD13Q9UNM6 376 aa11.47□□□□□ -0.57
CLN6-223ENST00000637823 APOBEC2Q9Y235 224 aaKnown RBP11.47□□□□□ -0.57
CLN6-223ENST00000637823 KCNK6Q9Y257 313 aa11.47□□□□□ -0.57
CLN6-223ENST00000637823 PLEKHM1Q9Y4G2 1056 aa11.47□□□□□ -0.57
CLN6-223ENST00000637823 TRAF6Q9Y4K3 522 aa11.47□□□□□ -0.57
CLN6-223ENST00000637823 ANGPTL3Q9Y5C1 460 aa11.47□□□□□ -0.57
CLN6-223ENST00000637823 A0A0G2JND7 137 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 A0A1W2PR77 199 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 MYO1CO00159 1063 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 MATN2O00339 956 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 UBFD1O14562 309 aaKnown RBP11.46□□□□□ -0.57
CLN6-223ENST00000637823 ZNF195O14628 629 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 GIPC1O14908 333 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 HDAC3O15379 428 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 CCNT2O60583 730 aaKnown RBP11.46□□□□□ -0.57
CLN6-223ENST00000637823 RASGRP1O95267 797 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 TDGF1P13385 188 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 EPB42P16452 691 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 TSPAN8P19075 237 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 BCKDHBP21953 392 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 BDKRB1P46663 353 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 SLC6A12P48065 614 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 FNTBP49356 437 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 AQP5P55064 265 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 SH3BP2P78314 561 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 CTBSQ01459 385 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 FZD2Q14332 565 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 RBBP7Q16576 425 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 UAP1L1Q3KQV9 507 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 FBXO48Q5FWF7 155 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.46□□□□□ -0.57
CLN6-223ENST00000637823 WDR45BQ5MNZ6 344 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 SH2D4BQ5SQS7 431 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 WASH2PQ6VEQ5 465 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 LRRC70Q7Z2Q7 622 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 GOLGA7Q7Z5G4 137 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 C11orf74Q86VG3 221 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 SPATS2Q86XZ4 545 aaKnown RBP11.46□□□□□ -0.57
CLN6-223ENST00000637823 HID1Q8IV36 788 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 C1orf210Q8IVY1 113 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 DCUN1D3Q8IWE4 304 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 HOMEZQ8IX15 550 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 KLHDC8AQ8IYD2 350 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 TBC1D21Q8IYX1 336 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 CLYBLQ8N0X4 340 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 SLC22A18ASQ8N1D0 253 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 TEX9Q8N6V9 391 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 PHC3Q8NDX5 983 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 SPDYE1Q8NFV5 336 aaPredicted RBP11.46□□□□□ -0.57
CLN6-223ENST00000637823 AGAP11Q8TF27 550 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 DNASE2BQ8WZ79 361 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 RAD51AP1Q96B01 352 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 SKA1Q96BD8 255 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 PDXPQ96GD0 296 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 RMDN2Q96LZ7 410 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 HSPA12BQ96MM6 686 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 SLC6A18Q96N87 628 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 ZNF382Q96SR6 550 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 TMEM120AQ9BXJ8 343 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 TRIT1Q9H3H1 467 aaKnown RBP11.46□□□□□ -0.57
CLN6-223ENST00000637823 STN1Q9H668 368 aaKnown RBP11.46□□□□□ -0.57
CLN6-223ENST00000637823 ZBTB26Q9HCK0 441 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 MID1IP1Q9NPA3 183 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 SEMA4BQ9NPR2 832 aaPredicted RBP11.46□□□□□ -0.57
CLN6-223ENST00000637823 WASH6PQ9NQA3 447 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 DNAJC28Q9NX36 388 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 STOX2Q9P2F5 926 aaPredicted RBP11.46□□□□□ -0.57
CLN6-223ENST00000637823 MARCOQ9UEW3 520 aaPredicted RBP11.46□□□□□ -0.57
CLN6-223ENST00000637823 ASF1AQ9Y294 204 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 ASB1Q9Y576 335 aa11.46□□□□□ -0.57
CLN6-223ENST00000637823 BDP1A6H8Y1 2624 aa11.45□□□□□ -0.58
CLN6-223ENST00000637823 TNRC6BQ9UPQ9 1833 aaKnown RBP11.45□□□□□ -0.58
CLN6-223ENST00000637823 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.45□□□□□ -0.58
CLN6-223ENST00000637823 TRPC5OSA6NMA1 111 aa11.45□□□□□ -0.58
CLN6-223ENST00000637823 EBAG9O00559 213 aa11.45□□□□□ -0.58
CLN6-223ENST00000637823 PPP6CO00743 305 aa11.45□□□□□ -0.58
CLN6-223ENST00000637823 ESRRBO95718 433 aa11.45□□□□□ -0.58
CLN6-223ENST00000637823 OTCP00480 354 aa11.45□□□□□ -0.58
CLN6-223ENST00000637823 RPL10P27635 214 aaKnown RBP11.45□□□□□ -0.58
CLN6-223ENST00000637823 HSD17B2P37059 387 aa11.45□□□□□ -0.58
CLN6-223ENST00000637823 GDF5P43026 501 aa11.45□□□□□ -0.58
CLN6-223ENST00000637823 BLKP51451 505 aa11.45□□□□□ -0.58
CLN6-223ENST00000637823 CSTF1Q05048 431 aaKnown RBP11.45□□□□□ -0.58
CLN6-223ENST00000637823 EIF2B5Q13144 721 aaKnown RBP11.45□□□□□ -0.58
CLN6-223ENST00000637823 PTCHD3Q3KNS1 767 aa11.45□□□□□ -0.58
CLN6-223ENST00000637823 CCSMST1Q4G0I0 132 aa11.45□□□□□ -0.58
CLN6-223ENST00000637823 AGTRAPQ6RW13 159 aa11.45□□□□□ -0.58
CLN6-223ENST00000637823 TSSK4Q6SA08 328 aa11.45□□□□□ -0.58
CLN6-223ENST00000637823 EPGNQ6UW88 154 aa11.45□□□□□ -0.58
CLN6-223ENST00000637823 ABRAXAS1Q6UWZ7 409 aa11.45□□□□□ -0.58
CLN6-223ENST00000637823 GPRIN3Q6ZVF9 776 aa11.45□□□□□ -0.58
CLN6-223ENST00000637823 LPCAT2Q7L5N7 544 aa11.45□□□□□ -0.58
CLN6-223ENST00000637823 LONP2Q86WA8 852 aa11.45□□□□□ -0.58
CLN6-223ENST00000637823 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms