RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 BMPR2Q13873 1038 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 LGSNQ5TDP6 509 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 MROH9Q5TGP6 573 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 CDCP2Q5VXM1 449 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 ARMC6Q6NXE6 501 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 RAPH1Q70E73 1250 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 OOSP2Q86WS3 158 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 PLXDC1Q8IUK5 500 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 CEP97Q8IW35 865 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 CNPY4Q8N129 248 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 OR4E2Q8NGC2 313 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 ASB11Q8WXH4 323 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 RDH14Q9HBH5 336 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 ZNF180Q9UJW8 692 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 OR6C74A6NCV1 312 aa18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 PABPN1LA6NDY0 278 aaKnown RBP18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 ZBTB14O43829 449 aa18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 C8GP07360 202 aa18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 HSD17B3P37058 310 aa18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 PGGT1BP53609 377 aa18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 PRKAA1Q13131 559 aa18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 ZNF460Q14592 562 aa18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 ZKSCAN8Q15776 578 aaPredicted RBP18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 WDR74Q6RFH5 385 aaPredicted RBP18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 CYHR1Q6ZMK1 362 aa18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 UBE2R2Q712K3 238 aaPredicted RBP18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 AMIGO1Q86WK6 493 aa18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 SPNS2Q8IVW8 549 aa18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 CACTIN-AS1Q8N1I8 211 aa18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 RSC1A1Q92681 617 aa18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 PDLIM5Q96HC4 596 aaKnown RBP18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 TMEM74Q96NL1 305 aa18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 NUDT22Q9BRQ3 303 aa18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 RAB11FIP5Q9BXF6 653 aa18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 OGFRQ9NZT2 677 aa18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 FETUBQ9UGM5 382 aa18.56■□□□□ 0.56
SQSTM1-216ENST00000626660 CACNA1BQ00975 2339 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 OR5K3A6NET4 321 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 ARHGEF33A8MVX0 844 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 TMX2-CTNND1H3BSU7 103 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 CASC3O15234 703 aaKnown RBP18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 SLC16A5O15375 505 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 PHGDHO43175 533 aaKnown RBP18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 ERLIN1O75477 346 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 TSPAN12O95859 305 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 CYP2A7P20853 494 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 CSF2RBP32927 897 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 SERPINB8P50452 374 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 CLDN6P56747 220 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 SP140Q13342 867 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 TMEM71Q6P5X7 295 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 TMPRSS7Q7RTY8 843 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 CCDC91Q7Z6B0 441 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 DCBLD1Q8N8Z6 715 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 OR4D9Q8NGE8 314 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 MCOLN3Q8TDD5 553 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 DCAKDQ8WVC6 231 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 ZDHHC12Q96GR4 267 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 XKR8Q9H6D3 395 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 PPCSQ9HAB8 311 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 HRASLS2Q9NWW9 162 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 PLAGL1Q9UM63 463 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 ICKQ9UPZ9 632 aa18.55■□□□□ 0.56
SQSTM1-216ENST00000626660 GFYI3L273 518 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 MATN2O00339 956 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 HYAL3O43820 417 aaPredicted RBP18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 CSO75390 466 aaKnown RBP18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 RAB28P51157 221 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 INHBCP55103 352 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 TAF1BQ53T94 588 aaPredicted RBP18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 PHF19Q5T6S3 580 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 IRGCQ6NXR0 463 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 TMEM207Q6UWW9 146 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 CMC1Q7Z7K0 106 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 TBC1D1Q86TI0 1168 aaPredicted RBP18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 FBXO15Q8NCQ5 510 aaPredicted RBP18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 OR9A1PQ8NGU1 263 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 ANKRD7Q92527 254 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 GRAMD1AQ96CP6 724 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 DHRS4Q9BTZ2 278 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 TRIM54Q9BYV2 358 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 STRADBQ9C0K7 418 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 RAB33BQ9H082 229 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 OR6C2Q9NZP2 312 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 SPATA7Q9P0W8 599 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 PSMC3IPQ9P2W1 217 aaPredicted RBP18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 EPHA6Q9UF33 1036 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 CIDEBQ9UHD4 219 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 LNPEPQ9UIQ6 1025 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 TLK1Q9UKI8 766 aa18.54■□□□□ 0.56
SQSTM1-216ENST00000626660 MN1Q10571 1320 aaPredicted RBP18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 GSAPA4D1B5 854 aa18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 TRIM49D1C9J1S8 452 aa18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 RASGRF2O14827 1237 aa18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 CAPN5O15484 640 aaPredicted RBP18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 SYF2O95926 243 aaKnown RBP18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 SNRPAP09012 282 aaKnown RBP18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 CCDC166P0CW27 439 aa18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 POLR2CP19387 275 aaPredicted RBP18.53■□□□□ 0.56
SQSTM1-216ENST00000626660 TYK2P29597 1187 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms