RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 MAPK8P45983 427 aa10.29□□□□□ -0.76
VPS11-208ENST00000621676 DGKEP52429 567 aa10.29□□□□□ -0.76
VPS11-208ENST00000621676 SLC18A1P54219 525 aa10.29□□□□□ -0.76
VPS11-208ENST00000621676 ACVR1Q04771 509 aa10.29□□□□□ -0.76
VPS11-208ENST00000621676 UAP1L1Q3KQV9 507 aa10.29□□□□□ -0.76
VPS11-208ENST00000621676 NEK5Q6P3R8 708 aa10.29□□□□□ -0.76
VPS11-208ENST00000621676 GALNT4Q8N4A0 578 aa10.29□□□□□ -0.76
VPS11-208ENST00000621676 GPR150Q8NGU9 434 aa10.29□□□□□ -0.76
VPS11-208ENST00000621676 CEP295NLQ96MC4 621 aa10.29□□□□□ -0.76
VPS11-208ENST00000621676 ZNF641Q96N77 438 aaPredicted RBP10.29□□□□□ -0.76
VPS11-208ENST00000621676 GPR174Q9BXC1 333 aa10.29□□□□□ -0.76
VPS11-208ENST00000621676 P2RY12Q9H244 342 aa10.29□□□□□ -0.76
VPS11-208ENST00000621676 OR51B5Q9H339 312 aa10.29□□□□□ -0.76
VPS11-208ENST00000621676 ACTR5Q9H9F9 607 aaPredicted RBP10.29□□□□□ -0.76
VPS11-208ENST00000621676 ALPK3Q96L96 1907 aa10.29□□□□□ -0.76
VPS11-208ENST00000621676 FAM149AA5PLN7 773 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 GLOD5A6NK44 160 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 E7EQ34 232 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 C1QTNF3-AMACRE9PGA6 284 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 LATS1O95835 1130 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 ANXA5P08758 320 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 HOXA9P31269 272 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 TAS2R38P59533 333 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 LCP2Q13094 533 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 MTA1Q13330 715 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 LAMB3Q13751 1172 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 MAP7D1Q3KQU3 841 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 TTLL9Q3SXZ7 439 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 GTDC1Q4AE62 458 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 ULK2Q8IYT8 1036 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 SHISA5Q8N114 240 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 GBP7Q8N8V2 638 aaPredicted RBP10.28□□□□□ -0.76
VPS11-208ENST00000621676 MCOLN3Q8TDD5 553 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 PPWD1Q96BP3 646 aaKnown RBP10.28□□□□□ -0.76
VPS11-208ENST00000621676 DERL2Q9GZP9 239 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 AASDHPPTQ9NRN7 309 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 PCTPQ9UKL6 214 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 SYCE1LA8MT33 242 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 E2F3O00716 465 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 SPINT1O43278 529 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 ULK1O75385 1050 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 CHEK2O96017 543 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 HOXB3P14651 431 aaPredicted RBP10.28□□□□□ -0.76
VPS11-208ENST00000621676 TACR1P25103 407 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 GTF2H3Q13889 308 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 SLC2A7Q6PXP3 512 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 CERS6Q6ZMG9 384 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 SLC22A9Q8IVM8 553 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 DSELQ8IZU8 1212 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 ASZ1Q8WWH4 475 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 ECHDC3Q96DC8 303 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 TRIM54Q9BYV2 358 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 WDR37Q9Y2I8 494 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 CPSF4O95639 269 aaKnown RBP10.28□□□□□ -0.76
VPS11-208ENST00000621676 FGF19O95750 216 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 EIF2S1P05198 315 aaKnown RBP10.28□□□□□ -0.76
VPS11-208ENST00000621676 MTHFD1P11586 935 aaKnown RBP10.28□□□□□ -0.76
VPS11-208ENST00000621676 XRCC1P18887 633 aaPredicted RBP10.28□□□□□ -0.76
VPS11-208ENST00000621676 SKIV2L2P42285 1042 aaKnown RBP10.28□□□□□ -0.76
VPS11-208ENST00000621676 DPP6P42658 865 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 THOP1P52888 689 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 MTPNP58546 118 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 EEF1AKMT2Q5JPI9 291 aaKnown RBP10.28□□□□□ -0.76
VPS11-208ENST00000621676 TPRG1LQ5T0D9 272 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 ACBD5Q5T8D3 534 aaPredicted RBP10.28□□□□□ -0.76
VPS11-208ENST00000621676 LPCAT4Q643R3 524 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 SPATS2Q86XZ4 545 aaKnown RBP10.28□□□□□ -0.76
VPS11-208ENST00000621676 PHYKPLQ8IUZ5 450 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 ZNF547Q8IVP9 402 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 RGL4Q8IZJ4 473 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 LEMD2Q8NC56 503 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 OR56A4Q8NGH8 313 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 CNDP1Q96KN2 507 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 C12orf66Q96MD2 445 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 TRAPPC9Q96Q05 1148 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 PANX3Q96QZ0 392 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 FERD3LQ96RJ6 166 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 TCF12Q99081 682 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 SEPHS2Q99611 448 aa10.28□□□□□ -0.76
VPS11-208ENST00000621676 TCEAL2Q9H3H9 227 aaPredicted RBP10.28□□□□□ -0.76
VPS11-208ENST00000621676 NINQ8N4C6 2090 aa10.27□□□□□ -0.76
VPS11-208ENST00000621676 H7BY64 318 aa10.27□□□□□ -0.76
VPS11-208ENST00000621676 AQP1P29972 269 aa10.27□□□□□ -0.76
VPS11-208ENST00000621676 ALDH9A1P49189 494 aa10.27□□□□□ -0.76
VPS11-208ENST00000621676 SLC7A2P52569 658 aa10.27□□□□□ -0.76
VPS11-208ENST00000621676 BIRC2Q13490 618 aa10.27□□□□□ -0.76
VPS11-208ENST00000621676 FAM129CQ86XR2 697 aa10.27□□□□□ -0.76
VPS11-208ENST00000621676 MMP21Q8N119 569 aa10.27□□□□□ -0.76
VPS11-208ENST00000621676 PTCD3Q96EY7 689 aaKnown RBP10.27□□□□□ -0.76
VPS11-208ENST00000621676 PRAP1Q96NZ9 151 aa10.27□□□□□ -0.76
VPS11-208ENST00000621676 TMEM121BQ9BXQ6 578 aaPredicted RBP10.27□□□□□ -0.76
VPS11-208ENST00000621676 TFB2MQ9H5Q4 396 aaKnown RBP10.27□□□□□ -0.76
VPS11-208ENST00000621676 EBF2Q9HAK2 575 aa10.27□□□□□ -0.76
VPS11-208ENST00000621676 FSCN3Q9NQT6 498 aa10.27□□□□□ -0.76
VPS11-208ENST00000621676 GULP1Q9UBP9 304 aa10.27□□□□□ -0.76
VPS11-208ENST00000621676 GNG14A0A1W2PPG7 69 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 E7ENX8 843 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 OR7A17O14581 309 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 KLF11O14901 512 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 PRAMEF4O60810 478 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms