RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CCT8L1PA6NM43 557 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 K7EPI3 171 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 MYO1CO00159 1063 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 KCNJ13O60928 360 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 STK16O75716 305 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 MAP4P27816 1152 aaKnown RBP13.89□□□□□ -0.19
USP39-220ENST00000613444 HTR1BP28222 390 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 MAGEA9P43362 315 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 GRB7Q14451 532 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 CLEC6AQ6EIG7 209 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 TTC23LQ6PF05 361 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 UNC5DQ6UXZ4 953 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 TEX9Q8N6V9 391 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 STON2Q8WXE9 905 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 CCT6BQ92526 530 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 TSACCQ96A04 125 aaPredicted RBP13.89□□□□□ -0.19
USP39-220ENST00000613444 CCDC138Q96M89 665 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 OR2M4Q96R27 311 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 NUF2Q9BZD4 464 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 WWP1Q9H0M0 922 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 NOL11Q9H8H0 719 aaKnown RBP13.89□□□□□ -0.19
USP39-220ENST00000613444 CARS2Q9HA77 564 aaKnown RBP13.89□□□□□ -0.19
USP39-220ENST00000613444 STOX2Q9P2F5 926 aaPredicted RBP13.89□□□□□ -0.19
USP39-220ENST00000613444 HEY2Q9UBP5 337 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 MOSPD1Q9UJG1 213 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 PSMD13Q9UNM6 376 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 GPSM3Q9Y4H4 160 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 ZDBF2Q9HCK1 2354 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 SCAMP1O15126 338 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 AXIN1O15169 862 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 CCNT2O60583 730 aaKnown RBP13.89□□□□□ -0.19
USP39-220ENST00000613444 ESRRBO95718 433 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 SLC16A8O95907 504 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 RPL10P27635 214 aaKnown RBP13.89□□□□□ -0.19
USP39-220ENST00000613444 IMPA1P29218 277 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 SERPINB3P29508 390 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 ERVPABLB-1P60509 514 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 TRAF3Q13114 568 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 ALG11Q2TAA5 492 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 PTCHD3Q3KNS1 767 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 KANK2Q63ZY3 851 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 ALYREFQ86V81 257 aaKnown RBP13.89□□□□□ -0.19
USP39-220ENST00000613444 SPATS2Q86XZ4 545 aaKnown RBP13.89□□□□□ -0.19
USP39-220ENST00000613444 KLHDC8AQ8IYD2 350 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 CLYBLQ8N0X4 340 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 DEFB119Q8N690 84 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 SLC6A18Q96N87 628 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 KCNA7Q96RP8 456 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 SLC32A1Q9H598 525 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 CAAP1Q9H8G2 361 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 OPTCQ9UBM4 332 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 CIDEBQ9UHD4 219 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 DNAJC15Q9Y5T4 150 aa13.89□□□□□ -0.19
USP39-220ENST00000613444 THADAQ6YHU6 1953 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 AZIN1O14977 448 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 NDUFS2O75306 463 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 HOXA6P31267 233 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 CLCNKAP51800 687 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 THOP1P52888 689 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 BTKQ06187 659 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 PDCD2Q16342 344 aaPredicted RBP13.88□□□□□ -0.19
USP39-220ENST00000613444 LETMD1Q6P1Q0 360 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 LRRC70Q7Z2Q7 622 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 MTDHQ86UE4 582 aaKnown RBP13.88□□□□□ -0.19
USP39-220ENST00000613444 OR5AR1Q8NGP9 310 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 TFGQ92734 400 aaPredicted RBP13.88□□□□□ -0.19
USP39-220ENST00000613444 PYCR2Q96C36 320 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 PRR11Q96HE9 360 aaPredicted RBP13.88□□□□□ -0.19
USP39-220ENST00000613444 MAELQ96JY0 434 aaKnown RBP13.88□□□□□ -0.19
USP39-220ENST00000613444 FAR2Q96K12 515 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 CDK15Q96Q40 435 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 ATG10Q9H0Y0 220 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 MYLK2Q9H1R3 596 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 IPPKQ9H8X2 491 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 TP53BP1Q12888 1972 aaPredicted RBP13.88□□□□□ -0.19
USP39-220ENST00000613444 HGSO14964 777 aaPredicted RBP13.88□□□□□ -0.19
USP39-220ENST00000613444 DIAPH2O60879 1101 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 AOC1P19801 751 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 BCKDHBP21953 392 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 CD27P26842 260 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 INHBCP55103 352 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 PKNOX1P55347 436 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 SRP54P61011 504 aaKnown RBP13.88□□□□□ -0.19
USP39-220ENST00000613444 AGTRAPQ6RW13 159 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 GPRIN3Q6ZVF9 776 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 KIRREL3Q8IZU9 778 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 DCBLD1Q8N8Z6 715 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 PHC3Q8NDX5 983 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 OR56A3Q8NH54 315 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 ZNF480Q8WV37 535 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 SNX19Q92543 992 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 LRRC37BQ96QE4 947 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 OR52B2Q96RD2 323 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 TUBB1Q9H4B7 451 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 WDR55Q9H6Y2 383 aaPredicted RBP13.88□□□□□ -0.19
USP39-220ENST00000613444 MEAF6Q9HAF1 191 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 KLQ9UEF7 1012 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 ASF1AQ9Y294 204 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 FIS1Q9Y3D6 152 aa13.88□□□□□ -0.19
USP39-220ENST00000613444 DGKBQ9Y6T7 804 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms