RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 TRIM16O95361 564 aa17.99■□□□□ 0.47
UPF1-210ENST00000600689 ITGB1P05556 798 aa17.99■□□□□ 0.47
UPF1-210ENST00000600689 PRR35P0CG20 571 aa17.99■□□□□ 0.47
UPF1-210ENST00000600689 HSPA7P48741 367 aa17.99■□□□□ 0.47
UPF1-210ENST00000600689 IRF5Q13568 498 aa17.99■□□□□ 0.47
UPF1-210ENST00000600689 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.99■□□□□ 0.47
UPF1-210ENST00000600689 KLHDC8BQ8IXV7 354 aa17.99■□□□□ 0.47
UPF1-210ENST00000600689 RHEBL1Q8TAI7 183 aa17.99■□□□□ 0.47
UPF1-210ENST00000600689 DYNC2LI1Q8TCX1 351 aa17.99■□□□□ 0.47
UPF1-210ENST00000600689 DMRTB1Q96MA1 342 aa17.99■□□□□ 0.47
UPF1-210ENST00000600689 TSPAN18Q96SJ8 248 aa17.99■□□□□ 0.47
UPF1-210ENST00000600689 ROGDIQ9GZN7 287 aa17.99■□□□□ 0.47
UPF1-210ENST00000600689 TMEFF2Q9UIK5 374 aaPredicted RBP17.99■□□□□ 0.47
UPF1-210ENST00000600689 PADI3Q9ULW8 664 aa17.99■□□□□ 0.47
UPF1-210ENST00000600689 PKP3Q9Y446 797 aa17.99■□□□□ 0.47
UPF1-210ENST00000600689 LAMA2P24043 3122 aaKnown RBP17.99■□□□□ 0.47
UPF1-210ENST00000600689 TPD52L2O43399 206 aaKnown RBP17.98■□□□□ 0.47
UPF1-210ENST00000600689 MLLT6P55198 1093 aaPredicted RBP17.98■□□□□ 0.47
UPF1-210ENST00000600689 FAM189BP81408 668 aa17.98■□□□□ 0.47
UPF1-210ENST00000600689 CCDC117Q8IWD4 279 aaPredicted RBP17.98■□□□□ 0.47
UPF1-210ENST00000600689 CELF2-AS1Q8N7Q2 184 aa17.98■□□□□ 0.47
UPF1-210ENST00000600689 SOCS4Q8WXH5 440 aa17.98■□□□□ 0.47
UPF1-210ENST00000600689 FAM120BQ96EK7 910 aaKnown RBP17.98■□□□□ 0.47
UPF1-210ENST00000600689 PSD2Q9BQI7 771 aa17.98■□□□□ 0.47
UPF1-210ENST00000600689 DPY30Q9C005 99 aa17.98■□□□□ 0.47
UPF1-210ENST00000600689 SCN3BQ9NY72 215 aa17.98■□□□□ 0.47
UPF1-210ENST00000600689 SLC25A37Q9NYZ2 338 aa17.98■□□□□ 0.47
UPF1-210ENST00000600689 ZNF451Q9Y4E5 1061 aa17.98■□□□□ 0.47
UPF1-210ENST00000600689 HSMCR30P0CW71 290 aa17.98■□□□□ 0.47
UPF1-210ENST00000600689 SLC26A3P40879 764 aa17.98■□□□□ 0.47
UPF1-210ENST00000600689 ZNF33AQ06730 810 aa17.98■□□□□ 0.47
UPF1-210ENST00000600689 TP53BP2Q13625 1128 aa17.98■□□□□ 0.47
UPF1-210ENST00000600689 CARD16Q5EG05 197 aa17.98■□□□□ 0.47
UPF1-210ENST00000600689 ZNF548Q8NEK5 533 aaPredicted RBP17.98■□□□□ 0.47
UPF1-210ENST00000600689 ZBTB18Q99592 522 aa17.98■□□□□ 0.47
UPF1-210ENST00000600689 TRIT1Q9H3H1 467 aaKnown RBP17.98■□□□□ 0.47
UPF1-210ENST00000600689 ABCC13Q9NSE7 274 aa17.98■□□□□ 0.47
UPF1-210ENST00000600689 ITGB1BP2Q9UKP3 347 aa17.98■□□□□ 0.47
UPF1-210ENST00000600689 ABCG2Q9UNQ0 655 aa17.98■□□□□ 0.47
UPF1-210ENST00000600689 PTCH2Q9Y6C5 1203 aa17.98■□□□□ 0.47
UPF1-210ENST00000600689 SCN10AQ9Y5Y9 1956 aa17.98■□□□□ 0.47
UPF1-210ENST00000600689 E2F3O00716 465 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 CREG1O75629 220 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 KRT75O95678 551 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 OR1E1P30953 314 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 VASH1Q7L8A9 365 aaPredicted RBP17.97■□□□□ 0.47
UPF1-210ENST00000600689 LIX1Q8N485 282 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 ATG16L2Q8NAA4 619 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 CDC26Q8NHZ8 85 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 RHBDF1Q96CC6 855 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 MYEOVQ96EZ4 313 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 OR52E6Q96RD3 313 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 SEC22BO75396 215 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 NUDT6P53370 316 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 IFITM2Q01629 132 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 MANEALQ5VSG8 457 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 GLT6D1Q7Z4J2 308 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 SERINC5Q86VE9 423 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 LYSMD2Q8IV50 215 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 OR5K1Q8NHB7 308 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 ATL1Q8WXF7 558 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 CTRCQ99895 268 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 EGFL8Q99944 293 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 DERL2Q9GZP9 239 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 RMND5AQ9H871 391 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 ATP13A1Q9HD20 1204 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 KIF17Q9P2E2 1029 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 FKBPLQ9UIM3 349 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 PCDHGA3Q9Y5H0 932 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 SNX8Q9Y5X2 465 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 A0A096LPI6 279 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 FAM47E-STBD1D6RA91 191 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 CYBAP13498 195 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 S100A1P23297 94 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 C21orf33P30042 268 aaPredicted RBP17.97■□□□□ 0.47
UPF1-210ENST00000600689 AKT1P31749 480 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 ZNF135P52742 658 aaPredicted RBP17.97■□□□□ 0.47
UPF1-210ENST00000600689 TRAF3Q13114 568 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 LRIT3Q3SXY7 679 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 PROX1Q92786 737 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 VMP1Q96GC9 406 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 SLIRPQ9GZT3 109 aaKnown RBP17.97■□□□□ 0.47
UPF1-210ENST00000600689 IPPKQ9H8X2 491 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 C14orf119Q9NWQ9 140 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 ANGPTL3Q9Y5C1 460 aa17.97■□□□□ 0.47
UPF1-210ENST00000600689 LCHNA4D1U4 455 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 RAMP2O60895 175 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 RFPL2O75678 378 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 CYP7B1O75881 506 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 CLK3P49761 638 aaKnown RBP17.96■□□□□ 0.47
UPF1-210ENST00000600689 GABARAPL2P60520 117 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 CAP1Q01518 475 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 TOP3AQ13472 1001 aaPredicted RBP17.96■□□□□ 0.47
UPF1-210ENST00000600689 PRSS36Q5K4E3 855 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 BRMS1LQ5PSV4 323 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 RGMBQ6NW40 437 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 SPATA2LQ8IUW3 424 aaPredicted RBP17.96■□□□□ 0.47
UPF1-210ENST00000600689 ZDHHC21Q8IVQ6 265 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 TMEM86AQ8N2M4 240 aa17.96■□□□□ 0.47
UPF1-210ENST00000600689 TSPEARQ8WU66 669 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms