RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 ZFAND4Q86XD8 727 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 DTX1Q86Y01 620 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 RAVER1Q8IY67 606 aaKnown RBP12.41□□□□□ -0.42
UPF1-208ENST00000600012 ANKRD42Q8N9B4 389 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 BANPQ8N9N5 519 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 FAM45AQ8TCE6 357 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 GPBAR1Q8TDU6 330 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 EXTL1Q92935 676 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 USP7Q93009 1102 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 FAM136AQ96C01 138 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 ULK4Q96C45 1275 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 APOPT1Q96IL0 206 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 ZSCAN5AQ9BUG6 496 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 LGR4Q9BXB1 951 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 GSDMCQ9BYG8 508 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 CDH19Q9H159 772 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 P2RY12Q9H244 342 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 VPS11Q9H270 941 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 CCDC68Q9H2F9 335 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 CARS2Q9HA77 564 aaKnown RBP12.41□□□□□ -0.42
UPF1-208ENST00000600012 PHPT1Q9NRX4 125 aaPredicted RBP12.41□□□□□ -0.42
UPF1-208ENST00000600012 SMOXQ9NWM0 555 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 ZDHHC3Q9NYG2 299 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 FOXJ2Q9P0K8 574 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 CORO1CQ9ULV4 474 aaPredicted RBP12.41□□□□□ -0.42
UPF1-208ENST00000600012 VPS9D1Q9Y2B5 631 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 PRSS21Q9Y6M0 314 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 A0A096LPK6 155 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 RHPN2P1A8MT19 583 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 C9orf172C9J069 976 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.4□□□□□ -0.42
UPF1-208ENST00000600012 AGRPO00253 132 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 PRMT5O14744 637 aaPredicted RBP12.4□□□□□ -0.42
UPF1-208ENST00000600012 HGSO14964 777 aaPredicted RBP12.4□□□□□ -0.42
UPF1-208ENST00000600012 INPP4BO15327 924 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 TYROBPO43914 113 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 NIPSNAP2O75323 286 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 MTX2O75431 263 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 SOD1P00441 154 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 C2P06681 752 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 PKMP14618 531 aaKnown RBP12.4□□□□□ -0.42
UPF1-208ENST00000600012 STMN1P16949 149 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 ZNF7P17097 686 aaPredicted RBP12.4□□□□□ -0.42
UPF1-208ENST00000600012 FDXRP22570 491 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 AKT1P31749 480 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 GPR1P46091 355 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 CSRP3P50461 194 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 SLC12A2P55011 1212 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 MAZP56270 477 aaKnown RBP12.4□□□□□ -0.42
UPF1-208ENST00000600012 RAB10P61026 200 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 POU4F1Q01851 419 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 MPP2Q14168 576 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 NR1D2Q14995 579 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 C16orf72Q14CZ0 275 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 ZKSCAN8Q15776 578 aaPredicted RBP12.4□□□□□ -0.42
UPF1-208ENST00000600012 KHDC1Q4VXA5 237 aaKnown RBP12.4□□□□□ -0.42
UPF1-208ENST00000600012 RAPH1Q70E73 1250 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 ZNF438Q7Z4V0 828 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 VASH2Q86V25 355 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 HEATR4Q86WZ0 1026 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 C17orf82Q86X59 251 aaPredicted RBP12.4□□□□□ -0.42
UPF1-208ENST00000600012 GDAP1Q8TB36 358 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 MGARPQ8TDB4 240 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 ACMSDQ8TDX5 336 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 ZDHHC1Q8WTX9 485 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 GLYATL1Q969I3 302 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 BIRC8Q96P09 236 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 TTC1Q99614 292 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 COPS8Q99627 209 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 C12orf65Q9H3J6 166 aaKnown RBP12.4□□□□□ -0.42
UPF1-208ENST00000600012 SEMA6CQ9H3T2 930 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 RDH14Q9HBH5 336 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 MLXIPLQ9NP71 852 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 STARD5Q9NSY2 213 aa12.4□□□□□ -0.42
UPF1-208ENST00000600012 TRNAU1APQ9NX07 287 aaKnown RBP12.4□□□□□ -0.42
UPF1-208ENST00000600012 NAV2Q8IVL1 2488 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 MAST4O15021 2626 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 IGLV3-16A0A075B6K0 115 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 IQCF5A8MTL0 148 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 COPEO14579 308 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 PRPF4O43172 522 aaKnown RBP eCLIP12.39□□□□□ -0.43
UPF1-208ENST00000600012 B4GAT1O43505 415 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 SLC35E2BP0CK96 405 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 ITGB6P18564 788 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 RPS3P23396 243 aaKnown RBP eCLIP12.39□□□□□ -0.432e-7■■■■□ 25.4
UPF1-208ENST00000600012 ALDH4A1P30038 563 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 PPARGP37231 505 aaPredicted RBP12.39□□□□□ -0.43
UPF1-208ENST00000600012 TIAL1Q01085 375 aaKnown RBP eCLIP12.39□□□□□ -0.43
UPF1-208ENST00000600012 BIRC2Q13490 618 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 AMZ1Q400G9 498 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 PTRHD1Q6GMV3 140 aaKnown RBP12.39□□□□□ -0.43
UPF1-208ENST00000600012 ATG14Q6ZNE5 492 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 CDHR3Q6ZTQ4 885 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 DET1Q7L5Y6 550 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 TRIM74Q86UV6 250 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 NRROSQ86YC3 692 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 CLDN19Q8N6F1 224 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 ARFGAP2Q8N6H7 521 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 DDHD1Q8NEL9 900 aa12.39□□□□□ -0.43
UPF1-208ENST00000600012 LKAAEAR1Q8TD35 194 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms