RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 TRIT1Q9H3H1 467 aaKnown RBP18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 ZNF768Q9H5H4 540 aaKnown RBP18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 HRASLS2Q9NWW9 162 aa18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 KLHL3Q9UH77 587 aa18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 POMT2Q9UKY4 750 aa18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 PLAGL1Q9UM63 463 aa18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 MGAQ8IWI9 3026 aa18.93■□□□□ 0.62
SHKBP1-221ENST00000599833 IGHV5-51A0A0C4DH38 117 aa18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 FAM159BA6NKW6 160 aa18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 C9orf172C9J069 976 aa18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 ITGA2BP08514 1039 aa18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 MLLT3P42568 568 aaPredicted RBP18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 MAGEA4P43358 317 aa18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 CUL1Q13616 776 aa18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 SNAP47Q5SQN1 464 aa18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 CAPN12Q6ZSI9 719 aa18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 FAM92BQ6ZTR7 304 aa18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 SLC26A11Q86WA9 606 aa18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 ZC3HC1Q86WB0 502 aaKnown RBP18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 AMIGO1Q86WK6 493 aa18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 RELL1Q8IUW5 271 aa18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 LMNTD1Q8N9Z9 388 aa18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 SNIP1Q8TAD8 396 aaKnown RBP18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 DENND1AQ8TEH3 1009 aa18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 LCN9Q8WX39 176 aa18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 OLFM1Q99784 485 aa18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 CMKLR1Q99788 373 aa18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 FAM114A2Q9NRY5 505 aa18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 AK5Q9Y6K8 562 aa18.92■□□□□ 0.62
SHKBP1-221ENST00000599833 PSIP1O75475 530 aaKnown RBP18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 TNFSF15O95150 251 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 TSPAN12O95859 305 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 GSTA2P09210 222 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 POLR2CP19387 275 aaPredicted RBP18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 FDXRP22570 491 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 PKLRP30613 574 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 BDKRB1P46663 353 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 ERVPABLB-1P60509 514 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 KLHL38Q2WGJ6 581 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 EEF1AKMT2Q5JPI9 291 aaKnown RBP18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 NEK10Q6ZWH5 1172 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 OOSP2Q86WS3 158 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 DCUN1D3Q8IWE4 304 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 AGBL5Q8NDL9 886 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 SLC41A2Q96JW4 573 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 ZNF578Q96N58 590 aaPredicted RBP18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 MAP3K3Q99759 626 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 PITPNM3Q9BZ71 974 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 FAM129AQ9BZQ8 928 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 PPANQ9NQ55 473 aaKnown RBP18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 SPHK1Q9NYA1 384 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 PISDQ9UG56 409 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 POLG2Q9UHN1 485 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 ACSL6Q9UKU0 697 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 ZMIZ1Q9ULJ6 1067 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 PCDHGA7Q9Y5G6 932 aa18.91■□□□□ 0.62
SHKBP1-221ENST00000599833 ARHGEF33A8MVX0 844 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 B4E171 279 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 E5RI56 91 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 WISP3O95389 354 aaPredicted RBP18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 TSPAN7P41732 249 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 KRT33BQ14525 404 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 HECTD2Q5U5R9 776 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 IRGCQ6NXR0 463 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 FBXO38Q6PIJ6 1188 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 TMEM207Q6UWW9 146 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 C3orf62Q6ZUJ4 267 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 STRA8Q7Z7C7 330 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 CPNE9Q8IYJ1 553 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 LSMEM2Q8N112 164 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 CFAP61Q8NHU2 1237 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 DLG3Q92796 817 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 INPP5DQ92835 1189 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 ZDHHC12Q96GR4 267 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 IL17FQ96PD4 163 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 SRMSQ9H3Y6 488 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 FOXJ2Q9P0K8 574 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 ZFATQ9P243 1243 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 CIDEBQ9UHD4 219 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 CORO1CQ9ULV4 474 aaPredicted RBP18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 RAXQ9Y2V3 346 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 PCDHGA3Q9Y5H0 932 aa18.9■□□□□ 0.62
SHKBP1-221ENST00000599833 TLCD2A6NGC4 264 aa18.89■□□□□ 0.61
SHKBP1-221ENST00000599833 EFCAB7A8K855 629 aa18.89■□□□□ 0.61
SHKBP1-221ENST00000599833 GFYI3L273 518 aa18.89■□□□□ 0.61
SHKBP1-221ENST00000599833 PRICKLE3O43900 615 aaPredicted RBP18.89■□□□□ 0.61
SHKBP1-221ENST00000599833 PRAMEF10O60809 474 aa18.89■□□□□ 0.61
SHKBP1-221ENST00000599833 MPC1LP0DKB6 136 aa18.89■□□□□ 0.61
SHKBP1-221ENST00000599833 ERGP11308 486 aa18.89■□□□□ 0.61
SHKBP1-221ENST00000599833 NELFEP18615 380 aaKnown RBP18.89■□□□□ 0.61
SHKBP1-221ENST00000599833 SHMT2P34897 504 aa18.89■□□□□ 0.61
SHKBP1-221ENST00000599833 SH3BP2P78314 561 aa18.89■□□□□ 0.61
SHKBP1-221ENST00000599833 MC2RQ01718 297 aa18.89■□□□□ 0.61
SHKBP1-221ENST00000599833 CACHD1Q5VU97 1274 aa18.89■□□□□ 0.61
SHKBP1-221ENST00000599833 KLHL35Q6PF15 583 aa18.89■□□□□ 0.61
SHKBP1-221ENST00000599833 FOXR1Q6PIV2 292 aa18.89■□□□□ 0.61
SHKBP1-221ENST00000599833 PAQR3Q6TCH7 311 aa18.89■□□□□ 0.61
SHKBP1-221ENST00000599833 PIWIL4Q7Z3Z4 852 aaKnown RBP18.89■□□□□ 0.61
SHKBP1-221ENST00000599833 CCDC25Q86WR0 208 aa18.89■□□□□ 0.61
SHKBP1-221ENST00000599833 PALM2Q8IXS6 379 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms