RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 NR6A1Q15406 480 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 TMEM52BQ4KMG9 183 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 NEK5Q6P3R8 708 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 NLRP8Q86W28 1048 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 HIST1H2AHQ96KK5 128 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 HIST1H2AJQ99878 128 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 CCM2Q9BSQ5 444 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 H2AFJQ9BTM1 129 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 IL1RL2Q9HB29 575 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 DYRK4Q9NR20 520 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 GULP1Q9UBP9 304 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 TRPS1Q9UHF7 1281 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 SLC5A10A0PJK1 596 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 ASPDHA6ND91 283 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 PRORSD1PA6NEY8 169 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 QSOX1O00391 747 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 TRIM38O00635 465 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 ACOT8O14734 319 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 LZTS3O60299 673 aaPredicted RBP16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 RPSAP08865 295 aaKnown RBP16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 CYP2A7P20853 494 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 PBLDP30039 288 aaPredicted RBP16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 GRIA2P42262 883 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 YBX1P67809 324 aaKnown RBP16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 GRIK2Q13002 908 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 AP5B1Q2VPB7 878 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 RFTN2Q52LD8 501 aaPredicted RBP16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 PDCD4Q53EL6 469 aaKnown RBP16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 SGO1Q5FBB7 561 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 CACUL1Q86Y37 369 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 MCOLN3Q8TDD5 553 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 VPS33AQ96AX1 596 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 ELSPBP1Q96BH3 223 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 SPAG4Q9NPE6 437 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 ZNHIT2Q9UHR6 403 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 NDUFAF1Q9Y375 327 aa16.63■□□□□ 0.25
SHKBP1-216ENST00000598201 ARHGEF33A8MVX0 844 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 ARNTLO00327 626 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 MANBAO00462 879 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 MAP3K7O43318 606 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 SLC22A3O75751 556 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 WDR47O94967 919 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 GSTM1P09488 218 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 PDHA2P29803 388 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 HNMTP50135 292 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 HMGCS1Q01581 520 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 GSTM4Q03013 218 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 EMX2Q04743 252 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 RCAN2Q14206 197 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 ZNF658BQ4V348 819 aaPredicted RBP16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 SYTL3Q4VX76 610 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 RAET1GQ6H3X3 334 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 ZNF765Q7L2R6 523 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 LRRC70Q7Z2Q7 622 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 ADHFE1Q8IWW8 467 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 TCAIMQ8N3R3 496 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 PCYOX1LQ8NBM8 494 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 PROKR1Q8TCW9 393 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 TMEM159Q96B96 161 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 ROPN1LQ96C74 230 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 SPDL1Q96EA4 605 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 GPATCH1Q9BRR8 931 aaKnown RBP16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 ATG10Q9H0Y0 220 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 OR2AG1Q9H205 316 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 HEBP1Q9NRV9 189 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 TMEM181Q9P2C4 612 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 GMPR2Q9P2T1 348 aaKnown RBP16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 CIDEBQ9UHD4 219 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 FADS3Q9Y5Q0 445 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 STON1Q9Y6Q2 735 aa16.62■□□□□ 0.25
SHKBP1-216ENST00000598201 C1QTNF3-AMACRE9PGA6 284 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 FXYD1O00168 92 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 ANGPT2O15123 496 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 NVLO15381 856 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 PRAMEF4O60810 478 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 LILRB5O75023 590 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 PSIP1O75475 530 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 BCAS2O75934 225 aaPredicted RBP16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 CLDN9O95484 217 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 G6PDP11413 515 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 ITPKAP23677 461 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 EIF2DP41214 584 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 GPR1P46091 355 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 AP1S2P56377 157 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 IRX1P78414 480 aaPredicted RBP16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 CCSMST1Q4G0I0 132 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 PIP5KL1Q5T9C9 394 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 PRAMEF9Q5VWM5 478 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 TLDC1Q6P9B6 456 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 MTSS1LQ765P7 747 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 DSG4Q86SJ6 1040 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 ADGRG6Q86SQ4 1221 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 CHCHD4Q8N4Q1 142 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 BHLHE22Q8NFJ8 381 aaPredicted RBP16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 NUDT8Q8WV74 236 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 HDAC8Q9BY41 377 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 PCDHAC1Q9H158 963 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 ACTL8Q9H568 366 aa16.61■□□□□ 0.25
SHKBP1-216ENST00000598201 ACTR8Q9H981 624 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms