RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 SCG2P13521 617 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 ETFAP13804 333 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 CD58P19256 250 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 ALDH4A1P30038 563 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 CCT6AP40227 531 aaKnown RBP3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 PAFAH1B1P43034 410 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 TDO2P48775 406 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 GNAQP50148 359 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 MMP14P50281 582 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 DRG2P55039 364 aaKnown RBP3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 SEC61BP60468 96 aaKnown RBP3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 VAMP2P63027 116 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 IRX3P78415 501 aaPredicted RBP3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 GRIK3Q13003 919 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 ORC2Q13416 577 aaPredicted RBP3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 DRP2Q13474 957 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 SPA17Q15506 151 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 CDC37Q16543 378 aaPredicted RBP3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 ASTE1Q2TB18 679 aaPredicted RBP3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 TMEM30BQ3MIR4 351 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 ZNF667Q5HYK9 610 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 RGMBQ6NW40 437 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 C6orf89Q6UWU4 347 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 SLC36A4Q6YBV0 504 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 KDM7AQ6ZMT4 941 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 MTSS1LQ765P7 747 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 DEFB132Q7Z7B7 95 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 GALNT5Q7Z7M9 940 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 KIAA1328Q86T90 577 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 BLIDQ8IZY5 108 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 CNPY4Q8N129 248 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 TTC30BQ8N4P2 665 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 SCCPDHQ8NBX0 429 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 AGBL3Q8NEM8 1001 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 STAMQ92783 540 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 SECISBP2LQ93073 1101 aaKnown RBP3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 P2RX5Q93086 422 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 ABTB1Q969K4 478 aaPredicted RBP3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 CCDC47Q96A33 483 aaKnown RBP3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 RSRC1Q96IZ7 334 aaKnown RBP3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 COG8Q96MW5 612 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 NCAPGQ9BPX3 1015 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 TREX2Q9BQ50 279 aaPredicted RBP3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 TUBGCP2Q9BSJ2 902 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 LRRC1Q9BTT6 524 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 BLZF1Q9H2G9 400 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 KAT14Q9H8E8 782 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 SNTG1Q9NSN8 517 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 ANKEF1Q9NU02 776 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 TCP11L1Q9NUJ3 509 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 AGPAT5Q9NUQ2 364 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 MCM9Q9NXL9 1143 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 ALKBH4Q9NXW9 302 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 NKIRAS2Q9NYR9 191 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 VPS54Q9P1Q0 977 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 TRIM10Q9UDY6 481 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 TRMT112Q9UI30 125 aaKnown RBP3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 FAM169AQ9Y6X4 670 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 GREB1LQ9C091 1923 aaPredicted RBP3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 GRIN2DO15399 1336 aa3.91□□□□□ -1.78
SMCHD1-208ENST00000583344 FAM170AA1A519 330 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 PGPEP1LA6NFU8 196 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 F5H0A9 414 aaPredicted RBP3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 ZNF263O14978 683 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 BCAT2O15382 392 aaPredicted RBP3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 PLOD3O60568 738 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 HSF2BPO75031 334 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 ERLIN2O94905 339 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 RTN3O95197 1032 aaPredicted RBP3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 PLEKHA8P1O95397 391 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 S1PR1P21453 382 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 KIF5BP33176 963 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 UBA7P41226 1012 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 MAGEA1P43355 309 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 KRTAP10-3P60369 221 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 EFR3AQ14156 821 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 PDIA5Q14554 519 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 CFAP221Q4G0U5 840 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 HAUS3Q68CZ6 603 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 ENOSF1Q7L5Y1 443 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 CCDC91Q7Z6B0 441 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 GPAT4Q86UL3 456 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 KMT5CQ86Y97 462 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 IFT20Q8IY31 132 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 C1orf87Q8N0U7 546 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 METTL27Q8N6F8 245 aaPredicted RBP3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 CSGALNACT2Q8N6G5 542 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 ANKRD52Q8NB46 1076 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 OR2AK2Q8NG84 335 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 MAGEC3Q8TD91 643 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 PIGBQ92521 554 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 ZUFSPQ96AP4 578 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 HVCN1Q96D96 273 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 CDCA5Q96FF9 252 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 CCDC42Q96M95 316 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 C7orf26Q96N11 449 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 ZNF570Q96NI8 536 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 F2RL3Q96RI0 385 aa3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 MYCBPQ99417 103 aaPredicted RBP3.9□□□□□ -1.79
SMCHD1-208ENST00000583344 EYA3Q99504 573 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms