RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 TTLL8A6PVC2 850 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 TCP11X1B4DZS4 312 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 BHMG1C9JSJ3 638 aaPredicted RBP6.5□□□□□ -1.37
VPS53-213ENST00000572334 MYO1CO00159 1063 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 MASP2O00187 686 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 MATN2O00339 956 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 ZNF749O43361 778 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 TMEM63AO94886 807 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 CRTAMO95727 393 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 CBSLP0DN79 551 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 TPH1P17752 444 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 ITGALP20701 1170 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 CDH3P22223 829 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 NDUFS1P28331 727 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 FOXN2P32314 431 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 CBSP35520 551 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 CD151P48509 253 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 ARL4DP49703 201 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 PGDP52209 483 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 VAV2P52735 878 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 PRKG2Q13237 762 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 KLF1Q13351 362 aaPredicted RBP6.5□□□□□ -1.37
VPS53-213ENST00000572334 ATP1A4Q13733 1029 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 NCF4Q15080 339 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 DBN1Q16643 649 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 GPR33Q49SQ1 333 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 HSP90B2PQ58FF3 399 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 CRB2Q5IJ48 1285 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 SLC6A19Q695T7 634 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 JMJD6Q6NYC1 403 aaPredicted RBP6.5□□□□□ -1.37
VPS53-213ENST00000572334 RAD9BQ6WBX8 426 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 NAPRTQ6XQN6 538 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 TRIM73Q86UV7 250 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 CDKL3Q8IVW4 592 aaPredicted RBP6.5□□□□□ -1.37
VPS53-213ENST00000572334 CCDC170Q8IYT3 715 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 LMNTD1Q8N9Z9 388 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 OR5AR1Q8NGP9 310 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 LCN9Q8WX39 176 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 SEC14L1Q92503 715 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 CPT1BQ92523 772 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 TFGQ92734 400 aaPredicted RBP6.5□□□□□ -1.37
VPS53-213ENST00000572334 INPP5DQ92835 1189 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 ULK4Q96C45 1275 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 CDKN2AIPNLQ96HQ2 116 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 MRFAP1L1Q96HT8 127 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 C16orf45Q96MC5 204 aaPredicted RBP6.5□□□□□ -1.37
VPS53-213ENST00000572334 OR2A14Q96R47 310 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 FERD3LQ96RJ6 166 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 SMAD5Q99717 465 aaKnown RBP6.5□□□□□ -1.37
VPS53-213ENST00000572334 HGH1Q9BTY7 390 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 MENTQ9BUN1 341 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 TRIM5Q9C035 493 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 SRMSQ9H3Y6 488 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 ACTR5Q9H9F9 607 aaPredicted RBP6.5□□□□□ -1.37
VPS53-213ENST00000572334 SYTL2Q9HCH5 934 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 ACSS2Q9NR19 701 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 SLC22A11Q9NSA0 550 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 PIH1D1Q9NWS0 290 aaKnown RBP6.5□□□□□ -1.37
VPS53-213ENST00000572334 SOHLH2Q9NX45 425 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 SPHK1Q9NYA1 384 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 ACTR10Q9NZ32 417 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 LUZP4Q9P127 313 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 SNX7Q9UNH6 387 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 R3HDM2Q9Y2K5 976 aaKnown RBP6.5□□□□□ -1.37
VPS53-213ENST00000572334 HEBP2Q9Y5Z4 205 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 EPN1Q9Y6I3 576 aaPredicted RBP6.5□□□□□ -1.37
VPS53-213ENST00000572334 SCN2AQ99250 2005 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 SLC5A10A0PJK1 596 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 GSAPA4D1B5 854 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 BTNL10A8MVZ5 291 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 EFCAB8A8MWE9 144 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 ZNF185O15231 689 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 KLK3P07288 261 aaPredicted RBP6.49□□□□□ -1.37
VPS53-213ENST00000572334 UMODP07911 640 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 RALBP11234 206 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 H2AFXP16104 143 aaPredicted RBP6.49□□□□□ -1.37
VPS53-213ENST00000572334 UGT2B7P16662 529 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 ITGAXP20702 1163 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 MCM3P25205 808 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 HADHAP40939 763 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 PDE1BQ01064 536 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 PRKAA1Q13131 559 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 RPA4Q13156 261 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 MRPL49Q13405 166 aaKnown RBP6.49□□□□□ -1.37
VPS53-213ENST00000572334 GRB7Q14451 532 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 POU6F1Q14863 301 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 INPP5JQ15735 1006 aaPredicted RBP6.49□□□□□ -1.37
VPS53-213ENST00000572334 DEFB110Q30KQ9 67 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 PLEKHN1Q494U1 663 aaPredicted RBP6.49□□□□□ -1.37
VPS53-213ENST00000572334 TMTC4Q5T4D3 741 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 ARMC6Q6NXE6 501 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 MRPL14Q6P1L8 145 aaKnown RBP6.49□□□□□ -1.37
VPS53-213ENST00000572334 DARS2Q6PI48 645 aaKnown RBP6.49□□□□□ -1.37
VPS53-213ENST00000572334 SPESP1Q6UW49 350 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 UNC5AQ6ZN44 842 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 ATCAYQ86WG3 371 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 AMIGO1Q86WK6 493 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 TMEM139Q8IV31 216 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 FAM20CQ8IXL6 584 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 DNAJC22Q8N4W6 341 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms